Author

M. S. Alexis

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Organism:mouse· 1 Assay:proteomics· 1

Frequent Co-Authors

C. B. Burge· 2 shared D. Dominguez· 2 shared A. Su· 1 shared B. Graveley· 1 shared C. Bazile· 1 shared E. L. Van Nostrand· 1 shared F. F. Cavazos· 1 shared G. A. Pratt· 1 shared

Activity by Year

2017-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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2 shared papersEvolutionary Biology

C. B. Burge

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2 papers

Recent·Most cited

Understanding species-specific and conserved RNA-protein interactions in vivo and in vitro

S. E. Harris, M. S. Alexis, G. Giri, F. F. Cavazos, J. Murn, M. M. Aleman, C. B. Burge, D. Dominguez

The paper examines interspecies differences in RNA-protein interactions using the neuronal RNA binding protein UNK, finding conserved binding patterns and species-specific sequence determinants.

bioRxiv · Jan 29, 2024 · PreprintEvolutionary Biology

Sequence, Structure and Context Preferences of Human RNA Binding Proteins

D. Dominguez, P. Freese, M. S. Alexis, A. Su, M. Hochman, T. Palden, C. Bazile, N. J. Lambert, E. L. Van Nostrand, G. A. Pratt, G. W. Yeo, B. Graveley, C. B. Burge

The paper presents affinity landscapes of 78 human RNA binding proteins using deep sequencing to determine sequence, structure, and context preferences, revealing patterns of low motif diversity and contextual feature preferences.

bioRxiv · Oct 12, 2017Biochemistry