Author

M. Yousef

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Ecology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Organism:mouse· 1

Frequent Co-Authors

A. M. Eren· 2 shared T. O. Delmont· 2 shared A. C. Schmid· 1 shared A. D. Willis· 1 shared A. R. Watson· 1 shared A. S. Raman· 1 shared A. Sakatani· 1 shared A. Sanchez· 1 shared

Activity by Year

2020-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersMicrobiology

A. M. Eren

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Author profile →

3 papers

Recent·Most cited

Learning the functional landscape of microbial communities

A. Skwara, K. Gowda, M. Yousef, J. Diaz-Colunga, A. S. Raman, A. Sanchez, M. Tikhonov, S. Kuehn

The paper introduces community-function landscapes to predict microbial community functions from strain presence/absence, showing they can be accurately trained with limited data and are broadly applicable.

bioRxiv · Mar 24, 2023 · PreprintEcology

Early-life microbial intervention reduces colitis risk promoted by antibiotic-induced gut dysbiosis

J. Miyoshi, S. Miyoshi, T. O. Delmont, C. Cham, S. T. M. Lee, A. Sakatani, K. Yang, Y. Shan, E. Kiefl, M. Yousef, S. Crosson, M. Sogin, D. A. Antonopoulos, A. M. Eren, V. Leone, E. B. Chang

The paper shows that adding a specific Bacteroides strain early in life reduces colitis risk in genetically susceptible mice with antibiotic-induced gut dysbiosis.

Gastroenterology · Sep 1, 2021Peer-reviewedMicrobiology

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

A. Shaiber, A. D. Willis, T. O. Delmont, S. Roux, L.-X. Chen, A. C. Schmid, M. Yousef, A. R. Watson, K. Lolans, O. C. Esen, S. T. Lee, N. Downey, H. G. Morrison, F. Dewhirst, J. L. Mark Welch, A. M. Eren

The paper analyzes oral microbiome metagenomes to identify niche partitioning among TM7 taxa, revealing distinct ecological and genetic patterns between plaque and tongue-associated TM7.

bioRxiv · Apr 29, 2020Microbiology