Author

Marion Varoqui

Centre National de la Recherche Scientifique

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:Drosophila· 2 Approach:experimental assay· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Séverine ChambeyroniD· 3 shared Alain Pélisson· 2 shared Bruno MugatiD· 2 shared Mourdas MohamediD· 2 shared Anaïs E. A. LarueiD· 1 shared Anna-Sophie Fiston-LavieriD· 1 shared Camille A Mayeux· 1 shared Charlotte GrimaudiD· 1 shared

Activity by Year

2022-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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3 shared papersGenomics

Séverine ChambeyronORCID

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3 papers

Recent·Most cited

Temporal and spatial niche partitioning in a retrotransposon community of the Drosophila genome

Marion Varoqui, Mourdas Mohamed, Bruno Mugat, Daniel Gourion, Maëlys Lemoine, Alain Pélisson, Charlotte Grimaud, Séverine Chambeyron

The paper shows that four Drosophila LTR-RTEs integrate into distinct chromatin domains and exhibit differential expression in specific tissues, leading to temporal and spatial niche partitioning.

bioRxiv · Aug 14, 2024 · PreprintGenomics

Intricate interactions between antiviral immunity and transposable element control in Drosophila

Camille A Mayeux, Anaïs E. A. Larue, Daniel Siqueira de Oliveira, Marion Varoqui, Hélène Henri, Rita Rebollo, Natacha Kremer, Séverine Chambeyron, Marie Fablet

This study shows that transposable elements (TEs) are involved in a dual response to Drosophila C Virus infection, where TE control is released and TE transcripts help reduce viral replication.

bioRxiv · Mar 18, 2024 · PreprintEvolutionary Biology

TrEMOLO: Accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches

Mourdas Mohamed, François Sabot, Marion Varoqui, Bruno Mugat, Katell Audouin, Alain Pélisson, Anna-Sophie Fiston-Lavier, Séverine Chambeyron

TrEMOLO estimates transposable element allele frequencies using long-read sequencing data by combining assembly and mapping approaches, outperforming existing tools in benchmark tests.

bioRxiv · Jul 21, 2022 · PreprintBioinformatics