Daniel Siqueira de Oliveira

The paper shows that cytoplasmic inheritance of piRNAs is critical for piRNA biogenesis and that trans-acting piRNAs connect piRNA clusters into a functional network.

This study uses long-read RNA-seq to identify and quantify transposable element transcripts at the copy level in Drosophila germline tissues, revealing differences in their transcriptional landscape between testes and ovaries.

This study investigates the role of transposable elements (TEs) in host shift-related genes of cactophilic Drosophila species, finding enrichment of TEs at promoter regions and their contribution to gene expression divergence.

This study shows that transposable elements (TEs) are involved in a dual response to Drosophila C Virus infection, where TE control is released and TE transcripts help reduce viral replication.

ChimeraTE detects chimeric transcripts from genes and transposable elements using two modes, identifying ~1.12% of genes generating such transcripts, with ~23% absent from the reference genome.

The paper investigates the association between transposable element expression and Y chromosome number in humans, suggesting a toxic Y effect on male longevity.

The paper uses bioinformatic analyses of RNA sequencing data to identify host and viral factors involved in SARS-CoV-2 pathogenesis, including differentially expressed genes and viral sequence variants linked to disease severity.