Author

Martin Hemberg

Wellcome Sanger Institute

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1 Developmental Biology· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Assay:scRNA-seq· 3 Approach:statistical model· 3 Research Focus:differential expression· 2 Organism:human· 2 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

Alex Shalek· 1 shared Alexander van OudenaardeniD· 1 shared Allon WagneriD· 1 shared Anda Zhang· 1 shared Andrea Asenjo-Martinez· 1 shared Andrew Farmer· 1 shared Anthony Phillipakis· 1 shared Anton J Enright· 1 shared

Activity by Year

2015-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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1 shared paperCell Biology

Alex Shalek

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4 papers

Recent·Most cited

Decoding the porcine developing spatial processing system and production of human entorhinal stellate cell-like cells by a direct programming approach.

Tobias Bergmann, Yong Liu, Leo Mogus, Julie Lee, Ulrich Pfisterer, Louis-Francois Handfield, Andrea Asenjo-Martinez, Irene Lisa Vargas, Stefan E. Seemann, Jimmy Tsz Hang Lee, Nikolaos Patikas, Birgitte Rahbek Kornum, Mark Denham, Poul Hyttel, Menno P. Witter, , Vanessa Jane Hall

The paper uses single-cell RNA sequencing to study porcine medial entorhinal cortex development and demonstrates the production of human entorhinal stellate cell-like cells from pluripotent stem cells.

bioRxiv · Apr 21, 2021 · PreprintDevelopmental Biology

The Human Cell Atlas

Aviv Regev, Sarah A. Teichmann, Eric S. Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy, Hans Clevers, Bart Deplancke, Ian Dunham, James Eberwine, Roland Eils, , the Human Cell Atlas Meeting Participants

The paper proposes the Human Cell Atlas project to catalog all human cell types through molecular profiling and connects this data with classical cellular descriptions.

bioRxiv · May 8, 2017 · PreprintCell Biology

Genomic positional conservation identifies topological anchor point (tap)RNAs linked to developmental loci

Paulo P Amaral, Tommaso Leonardi, Namshik Han, Emmanuelle Vire, Dennis K Gascoigne, Raul Arias-Carrasco, Magdalena Buscher, Anda Zhang, Stefano Pluchino, Vinicius Maracaja-Coutinho, Helder I Nakaya, Martin Hemberg, Ramin Shiekhattar, Anton J Enright, Tony Kouzarides

The paper identifies positionally conserved lncRNAs linked to developmental loci and chromatin organization, revealing their functional connections to coding genes and cancer metastasis.

bioRxiv · May 4, 2016Molecular Biology

Discrete Distributional Differential Expression (D3E) - A Tool for Gene Expression Analysis of Single-cell RNA-seq Data

Mihails Delmans, Martin Hemberg

The paper introduces D3E, a discrete distributional method for differential gene expression analysis in single-cell RNA-seq data, showing it can detect expression changes even when mean levels are unchanged.

bioRxiv · Oct 29, 2015Bioinformatics