Author

Mat Smith

Elements Biosciences (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Genomics· 2

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:long-read sequencing· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Bao‐Guo Ren· 2 shared Caroline A. Obert· 2 shared Silvia LiuiD· 2 shared Tuval Ben-Yehezkel· 2 shared Wenjia WangiD· 2 shared Yanping YuiD· 2 shared Alejandro Soto–GutiérreziD· 1 shared Alina Ostrowska· 1 shared

Activity by Year

2023-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersGenomics

Bao‐Guo Ren

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Utility Analyses of AVITI Sequencing Chemistry

Silvia Liu, Caroline A. Obert, Yanping Yu, Junhua Zhao, Bao‐Guo Ren, Jia-Jun Liu, Kelly N. Wiseman, Benjamin J. Krajacich, Wenjia Wang, Kyle S. Metcalfe, Mat Smith, Tuval Ben-Yehezkel, Jianhua Luo

This study compares the AVITI and Illumina sequencing chemistries for DNA and RNA short-read and long-read sequencing, finding AVITI has higher quality scores and lower error rates in short-read applications.

bioRxiv · Apr 18, 2024 · PreprintGenomics

Long-read single-cell sequencing reveals expressions of hypermutation clusters of isoforms in human liver cancer cells

Silvia Liu, Yanping Yu, Bao‐Guo Ren, Tuval Ben-Yehezkel, Caroline A. Obert, Mat Smith, Wenjia Wang, Alina Ostrowska, Alejandro Soto–Gutiérrez, Jianhua Luo

The paper uses long-read single-cell sequencing to identify mutation-specific mRNA isoforms and fusion transcripts in liver cancer cells, improving classification of cancer versus benign cells.

eLife · Jun 23, 2023Peer-reviewedGenomics