Author

Matthew Cooper

University of Oxford

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2 Neuroscience· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Research Focus:drug response / drug discovery· 2 Assay:electronic health records· 2 Assay:long-read sequencing· 2 Organism:mouse· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Alysha Elliott· 2 shared Devika GanesamoorthyiD· 2 shared Edward O. ManniD· 2 shared Minh Duc CaoiD· 2 shared A. Louise UptoniD· 1 shared Antonia Langfelder· 1 shared David M. BannermaniD· 1 shared Elie Sader· 1 shared

Activity by Year

2016-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBioinformatics

Alysha Elliott

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4 papers

Recent·Most cited

Calcium-permeable AMPAR in hippocampal parvalbumin-expressing interneurons protect against memory interference

Matthew Cooper, Mina Moniri, Mohammed Abuelem, David M. Bannerman, Edward O. Mann

This study shows that reducing Ca2+-permeable AMPARs in PV+ interneurons impairs working memory and reversal learning but not initial memory acquisition.

bioRxiv · Apr 29, 2025 · PreprintNeuroscience

Motor cortex can modulate somatosensory processing via cortico-thalamo-cortical pathway

Michael Lohse, Matthew Cooper, Elie Sader, Antonia Langfelder, Martin C. Kahn, Luke Baxter, Julian Bartram, James W. Phillips, A. Louise Upton, Edward O. Mann

This study shows that motor cortex modulates somatosensory processing through a cortico-thalamo-cortical pathway, with thalamic circuits playing a key role in tactile suppression.

bioRxiv · Jul 13, 2018 · PreprintNeuroscience

Scaffolding and Completing Genome Assemblies in Real-time with Nanopore Sequencing

Minh Duc Cao, Son Hoang Nguyen, Devika Ganesamoorthy, Alysha Elliott, Matthew Cooper, Lachlan J M Coin

This paper introduces a real-time method using nanopore sequencing to scaffold and complete genome assemblies, improving accuracy and reducing data and resource requirements.

bioRxiv · May 22, 2016Bioinformatics

Streaming algorithms for identification of pathogens and antibiotic resistance potential from real-time MinION sequencing

Minh Duc Cao, Devika Ganesamoorthy, Alysha Elliott, Huihui Zhang, Matthew Cooper, Lachlan Coin

This paper presents streaming algorithms for real-time MinION sequencing to identify pathogens and antibiotic resistance, demonstrating rapid species and resistance profile detection.

bioRxiv · Apr 6, 2016Bioinformatics