Author

Mette Boyd

University of Copenhagen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 3

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Assay:CUT&Tag· 1

Frequent Co-Authors

Jette BornholdtiD· 3 shared Albin SandeliniD· 2 shared Robin AnderssoniD· 2 shared Adam BaliciD· 1 shared Ahmad M. N. Alhendi· 1 shared Ailsa J Carlisle· 1 shared Ajuna AzadiD· 1 shared Akira HasegawaiD· 1 shared

Activity by Year

2014-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 32 mutual co-author links

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3 shared papersGenomics

Jette BornholdtORCID

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3 papers

Recent·Most cited

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

Mathys Grapotte, Manu Saraswat, Chloé Bessière, Christophe Menichelli, Jordan A. Ramilowski, Jessica Severin, Yoshihide Hayashizaki, Masayoshi Itoh, Michihira Tagami, Mitsuyoshi Murata, Miki Kojima-Ishiyama, Shohei Noma, Shuhei Noguchi, Takeya Kasukawa, Akira Hasegawa, , Lothar C. Dieterich

The paper identifies widespread transcription initiation at microsatellites across species and develops deep learning models to predict STR-associated transcription and its impact on disease variants.

Nature Communications · Jun 2, 2021Peer-reviewedGenomics

Comprehensive profiling of the fission yeast transcription start site activity during stress and media response

Malte Thodberg, Axel Thieffry, Jette Bornholdt, Mette Boyd, Christian Holmberg, Ajuna Azad, Christopher Thomas Workman, Yun Chen, Karl Ekwall, Olaf Nielsen, Albin Sandelin

This study provides a comprehensive TSS map for fission yeast under various stress and media conditions using CAGE, revealing new insights into gene regulation and promoter diversity.

Nucleic Acids Research · Nov 26, 2018Peer-reviewedGenomics

Nuclear stability and transcriptional directionality separate functionally distinct RNA species

Robin Andersson, Peter Refsing Andersen, Eivind Valen, Leighton Core, Jette Bornholdt, Mette Boyd, Torben Heick Jensen, Albin Sandelin

The paper develops a method to classify human RNAs based on exosome sensitivity and transcription initiation, identifying functional lncRNAs and distinguishing them from unstable transcripts.

bioRxiv · Aug 29, 2014Genomics