HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities.
Lajos Kalmár, Srishti Gupta, Iain Robert Louis Kean, Xiaoliang Ba, Nazreen F. Hadjirin, Elizabeth M. Lay, Stefan P. W. de Vries, Michael Bateman, Harriet Bartlet, Juan Hernandez-Garcia, Alexander W. Tucker, Olivier Restif, Mark P. Stevens, James L. N. Wood, Duncan J. Maskell, , Mark A. Holmes
HAM-ART improves metagenomics by linking AMR genes to host chromosomes and plasmids, showing differences in AMR gene distribution between pig farms with varying antibiotic use.
PLoS Genetics · Mar 14, 2022Peer-reviewedBioinformatics