Author

James L. N. Wood

University of CambridgeORCID 0000-0002-0258-3188Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 3 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1

Frequent Co-Authors

Andrew J. K. ConlaniD· 2 shared Andries J. van TonderiD· 2 shared Eleftheria PalkopoulouiD· 2 shared Julian ParkhilliD· 2 shared R. Glyn HewinsoniD· 2 shared A.P. MitchelliD· 1 shared Abde Aliy· 1 shared Abebe OlaniiD· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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2 shared papersGenomics

Andrew J. K. ConlanORCID

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Author profile →

3 papers

Recent·Most cited

HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities.

Lajos Kalmár, Srishti Gupta, Iain Robert Louis Kean, Xiaoliang Ba, Nazreen F. Hadjirin, Elizabeth M. Lay, Stefan P. W. de Vries, Michael Bateman, Harriet Bartlet, Juan Hernandez-Garcia, Alexander W. Tucker, Olivier Restif, Mark P. Stevens, James L. N. Wood, Duncan J. Maskell, , Mark A. Holmes

HAM-ART improves metagenomics by linking AMR genes to host chromosomes and plasmids, showing differences in AMR gene distribution between pig farms with varying antibiotic use.

PLoS Genetics · Mar 14, 2022Peer-reviewedBioinformatics

Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial

Andries J. van Tonder, Mark Thornton, Andrew J. K. Conlan, Keith A. Jolley, Lee Goolding, A.P. Mitchell, James Dale, Eleftheria Palkopoulou, Philip J. Hogarth, R. Glyn Hewinson, James L. N. Wood, Julian Parkhill

The paper uses whole genome sequences and movement data to infer M. bovis transmission routes between cattle and badgers, finding higher cattle-to-cattle and badger-to-badger transmission rates than between species.

PLoS Pathogens · Nov 29, 2021Peer-reviewedGenomics

Population structure and transmission of Mycobacterium bovis in Ethiopia

Gizat Almaw, Getnet Abie Mekonnen, Adane Mihret, Abraham Aseffa, Hawult Taye, Andrew J. K. Conlan, Balako Gumi, Aboma Zewude, Abde Aliy, Mekdes Tamiru, Abebe Olani, Matios Lakew, Melaku Sombo, Solomon Gebre, Colette D. Diguimbaye, , Andries J. van Tonder

This study uses whole genome sequencing to analyze the population structure and transmission patterns of Mycobacterium bovis in Ethiopia, identifying two distinct introductions of the Eu3 clonal complex from Europe.

Microbial Genomics · May 4, 2021Peer-reviewedGenomics