Author

Nazreen F. Hadjirin

University of Cambridge

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:database / resource· 1 Organism:E. coli· 1 Approach:experimental assay· 1

Frequent Co-Authors

Juan Hernandez-GarciaiD· 2 shared Alexander W. TuckeriD· 1 shared Andrew J. GrantiD· 1 shared Angela B. BrueggemanniD· 1 shared Beth BlaneiD· 1 shared Carolyne HorneriD· 1 shared Catherine LuddeniD· 1 shared Dorota M. JamrozyiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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2 shared papersBioinformatics

Juan Hernandez-GarciaORCID

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Author profile →

3 papers

Recent·Most cited

Development of a core genome multilocus sequence typing (cgMLST) scheme and life identification number (LIN) code classification system for Staphylococcus aureus

Nazreen F. Hadjirin, Iman Yassine, James E. Bray, Martin C. J. Maiden, Keith A. Jolley, Angela B. Brueggemann

The paper develops a cgMLST scheme and LIN code system for S. aureus to enable high-resolution genotyping and classification of genetic lineages.

bioRxiv · Mar 29, 2025 · PreprintGenomics

HAM-ART: An optimised culture-free Hi-C metagenomics pipeline for tracking antimicrobial resistance genes in complex microbial communities.

Lajos Kalmár, Srishti Gupta, Iain Robert Louis Kean, Xiaoliang Ba, Nazreen F. Hadjirin, Elizabeth M. Lay, Stefan P. W. de Vries, Michael Bateman, Harriet Bartlet, Juan Hernandez-Garcia, Alexander W. Tucker, Olivier Restif, Mark P. Stevens, James L. N. Wood, Duncan J. Maskell, , Mark A. Holmes

HAM-ART improves metagenomics by linking AMR genes to host chromosomes and plasmids, showing differences in AMR gene distribution between pig farms with varying antibiotic use.

PLoS Genetics · Mar 14, 2022Peer-reviewedBioinformatics

One Health genomic surveillance of Escherichia coli demonstrates distinct lineages and mobile genetic elements in isolates from humans versus livestock

Catherine Ludden, Kathy E. Raven, Dorota M. Jamrozy, Theodore Gouliouris, Beth Blane, Francesc Coll, Marcus Christofoor de Goffau, Plamena Naydenova, Carolyne Horner, Juan Hernandez-Garcia, Paul M. Wood, Nazreen F. Hadjirin, Milorad Radakovic, Nicholas M. Brown, Mark Holmes, , Sharon J. Peacock

The paper compares E. coli isolates from humans and livestock to assess transmission and resistance gene sharing, finding genetic distinctions and limited shared antimicrobial resistance genes.

mBio · Jan 21, 2019Peer-reviewedGenomics