Greengenes2 enables a shared data universe for microbiome studies
Daniel T. McDonald, Yueyu Jiang, Metin Balaban, Kalen Cantrell, Qiyun Zhu, Antonio González, James T. Morton, Giorgia Nicolaou, Donovan H. Parks, Søren Michael Karst, Mads Albertsen, Philip Hugenholtz, Todd Z. DeSantis, Se Jin Song, Andrew P. Bartko, , Rob D. Knight
Greengenes2 aligns 16S rRNA and shotgun metagenomic data using a whole-genome phylogeny, showing agreement in principal coordinates, taxonomy, and phenotype effect size.
bioRxiv · Dec 19, 2022 · PreprintBioinformatics