Author

Mostafa Ronaghi

Illumina (United States)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Assay:spatial transcriptomics· 2 Research Focus:differential expression· 1 Organism:human· 1 Assay:imaging· 1 Organism:mouse· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Åke BorgiD· 1 shared Alireza MajdiD· 1 shared Annarita Scaramozza· 1 shared Aviv RegeviD· 1 shared Behnam Javanmardi· 1 shared Camilla ValenteiD· 1 shared Carmen Xiao· 1 shared Chris Cox· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Åke BorgORCID

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Author profile →

2 papers

Recent·Most cited

Scalable longitudinal imaging and transcriptomics of cells in dynamic enclosures

Tarun K. Khurana, Liz Y. Wu, Pier Federico Gherardini, Seyedsina Moeinzadeh, Mehdi Mohseni, Filiz Gorpe Yasar, Roger Dettloff, Justin Poelma, Shan Sabri, Annarita Scaramozza, Yunmin Li, Nirvan Rouzbeh, Nicholas Elder, Shreya S. Deshmukh, Alireza Majd, , Mostafa Ronaghi

This paper develops a platform for longitudinal imaging and transcriptomics of live cells, revealing adaptive drug-resistant states and key drivers of cellular function through integrated analysis.

bioRxiv · May 8, 2026 · PreprintSystems Biology

High-density spatial transcriptomics arrays for in situ tissue profiling

Sanja Vicković, Gökçen Eraslan, Fredrik Salmén, Johanna Klughammer, Linnea Stenbeck, Denis Schapiro, Tarmo Äijö, Richard Bonneau, Ludvig Bergenstråhle, José Fernández Navarro, Joshua Gould, Gabriel Kenneth Griffin, Åke Borg, Mostafa Ronaghi, Jonas Frisén, , Patrik L. Ståhl

This paper introduces HDST, a high-resolution spatial transcriptomics method, and demonstrates its application in mouse brain tissue to resolve spatial expression patterns and cell types.

Nature Methods · Sep 9, 2019Peer-reviewedGenomics