Author

Nicola Biondi

German Cancer Research Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Bioinformatics· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:cancer & tumor microenvironment· 1 Approach:genetic perturbation / CRISPR· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Priya ChudasamaiD· 3 shared Claudia ScholliD· 2 shared Sebastian BaueriD· 2 shared Stefan Froehling· 2 shared Adarsh raveendran· 1 shared Akanksha Farswan· 1 shared Alisa Martina Lörsch· 1 shared Anushka DeshpandeiD· 1 shared

Activity by Year

2023-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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3 shared papersCancer Biology

Priya ChudasamaORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

EWSR1::ATF1 hyperactivation via TRIM11 depletion triggers lethal metabolic rewiring in clear cell sarcoma

Wenxin Chao, Kilian Bales, Kamini Kaushal, Laura Mayerhofer, Julien Picotto, Akanksha Farswan, Christopher Davies, Dawid Krzeciesa, Susanne Grunewald, Francisco Yanqui-Rivera, Nicola Biondi, Liang Chen, Adarsh raveendran, Anushka Deshpande, Kwang Seok Lee, , Priya Chudasama

This study identifies TRIM11 as a regulator of EWSR1::ATF1 stability in clear cell sarcoma, showing its depletion leads to metabolic rewiring and cell death, with PCK1 as a potential biomarker.

bioRxiv · Nov 10, 2026 · PreprintCancer Biology

Mapping the genomic and transcriptomic features associated with telomere maintenance mechanisms in complex karyotype sarcomas

Nicola Biondi, Maria Luisa Ratto, Rajesh Pal, Tobias Rausch, Stefanie Stirl, Laura Villacorta, Armin Hadzic, Caroline Knotz, Lina Sieverling, Miguel A. González-Woge, Katrin Pfütze, Christina Geörg, Cihan Erkut, Umut Toprak, Sabine A. Stainczyk, , Priya Chudasama

The paper identifies genomic and transcriptomic features of telomere maintenance mechanisms in complex karyotype sarcomas, linking ALT status to therapeutic vulnerabilities.

bioRxiv · May 26, 2026 · PreprintCancer Biology

Heterogeneity in the gene regulatory landscape of leiomyosarcoma.

Tatiana Belova, Nicola Biondi, Ping‐Han Hsieh, Pavlo Lutsik, Priya Chudasama, Marieke L. Kuijjer

The paper develops a computational framework to identify regulatory heterogeneity in leiomyosarcoma by analyzing gene regulatory networks and validates findings in independent datasets.

NAR Cancer · Jun 9, 2023Peer-reviewedBioinformatics