Author

P. P. Gardner

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Biochemistry· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:whole-genome sequencing· 3 Organism:bacteria (other)· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1

Frequent Co-Authors

A. Cloutier· 1 shared A. J. Baker· 1 shared A. K. Cain· 1 shared C. J. Boinett· 1 shared C. Warnecke· 1 shared D. J. Pickard· 1 shared F. Ashari Ghomi· 1 shared G. Langridge· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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Curved chords = mutual co-authorship

1 shared paperEvolutionary Biology

A. Cloutier

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Author profile →

4 papers

Recent·Most cited

High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality

F. Ashari Ghomi, G. Langridge, A. K. Cain, C. J. Boinett, M. Abd El Ghany, D. J. Pickard, R. A. Kingsley, N. Thomson, J. Parkhill, P. P. Gardner, L. Barquist

The paper uses transposon mutagenesis across Enterobacteriaceae species to identify core essential genes and shows rapid turnover of essentiality across related strains.

bioRxiv · Oct 20, 2022Microbiology

Finding priority ribosomes for future structural and pathogen research based upon global RNA and protein sequence analysis

H. B. Cooper, K. L. Krause, P. P. Gardner

This study identifies priority bacteria for ribosome structure analysis to improve antibiotic research by analyzing RNA and protein sequence diversity across bacterial species.

bioRxiv · Jun 14, 2021 · PreprintBiochemistry

A nucleus-forming jumbophage evades CRISPR-Cas DNA targeting but is vulnerable to type III RNA-based immunity

L. M. Malone, S. L. Warring, S. A. Jackson, C. Warnecke, P. P. Gardner, L. F. Gumy, P. C. Fineran

The paper identifies a jumbophage that evades DNA-targeting CRISPR-Cas systems but is vulnerable to type III RNA-based immunity, revealing the role of nucleus-like structures in immune evasion.

bioRxiv · Sep 25, 2019Microbiology

Convergent regulatory evolution and the origin of flightlessness in palaeognathous birds

T. B. Sackton, P. Grayson, A. Cloutier, Z. Hu, J. S. Liu, N. E. Wheeler, P. P. Gardner, J. A. Clarke, A. J. Baker, M. Clamp, S. V. Edwards

This study shows that convergent flightlessness in palaeognathous birds is associated with regulatory changes rather than protein-coding gene evolution.

bioRxiv · Feb 8, 2018Evolutionary Biology