Author

P. van Baarlen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:bacteria (other)· 2 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:differential expression· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1

Frequent Co-Authors

J. M. Wells· 3 shared J. Boekhorst· 2 shared M. L. Ferrando· 2 shared S. Fredriksen· 2 shared A. Gussak· 1 shared C. Neila-Ibanez· 1 shared F. Correa-Fiz· 1 shared G. G. R. Murray· 1 shared

Activity by Year

2018-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersMicrobiology

J. M. Wells

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Author profile →

4 papers

Recent·Most cited

Transcriptomics in serum and culture medium reveal shared and differential gene regulation in pathogenic and commensal Streptococcus suis

S. Fredriksen, S. D. E. Ruijten, G. G. R. Murray, M. Juanpere-Borras, P. van Baarlen, J. Boekhorst, J. M. Wells

This study compares transcriptomes of pathogenic and commensal Streptococcus suis strains in different media, finding conserved gene regulation in serum but divergent pathway expression.

bioRxiv · Oct 16, 2022 · PreprintMicrobiology

Streptococcus suis infection on European farms is associated with an altered tonsil microbiome and resistome

S. Fredriksen, C. Neila-Ibanez, I. Hennig-Pauka, X. Guan, J. Dunkelberger, I. Fernandes de Oliveira, M. L. Ferrando, F. Correa-Fiz, V. Aragon, J. Boekhorst, P. van Baarlen, J. M. Wells

The paper investigates the association between Streptococcus suis infection in piglets and changes in their tonsil microbiome and resistome, finding altered microbial composition and increased antimicrobial resistance genes.

bioRxiv · Aug 1, 2022 · PreprintMicrobiology

Complement active human and porcine serum induces natural competence for genetic transformation in the emerging zoonotic pathogen Streptococcus suis

M. L. Ferrando, A. Gussak, S. Mentink, P. van Baarlen, J. M. Wells

The paper shows that active human and porcine serum induces natural competence in Streptococcus suis, while pre-heated serum or fetal bovine serum does not.

bioRxiv · Mar 19, 2020Microbiology

An open microscopy framework suited for tracking dCas9 in live bacteria

K. J. A. Martens, S. van Beljouw, S. van der Els, S. Baas, J. N. A. Vink, S. J. J. Brouns, P. van Baarlen, M. Kleerebezem, J. Hohlbein

The paper introduces a low-cost super-resolution microscope for tracking dCas9 in live bacteria and quantifies its binding kinetics.

bioRxiv · Oct 8, 2018Biophysics