Author

Philip D. Rubin

University of Bern

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Assay:ATAC-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:clustering· 1

Frequent Co-Authors

Chiara MungoiD· 1 shared Haiyuan YuiD· 1 shared Jelena Kresoja‐RakiciD· 1 shared Kaivalya WalavalkariD· 1 shared Kellie A. CotteriD· 1 shared Mark A. RubiniD· 1 shared Mark GersteiniD· 1 shared Mathieu RaingevaliD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperGenomics

Chiara MungoORCID

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2 papers

Recent·Most cited

Single-cell dynamics of genome-nucleolus interactions captured by nucleolar laser microdissection (NoLMseq)

Kaivalya Walavalkar, Shivani Gupta, Jelena Kresoja‐Rakic, Mathieu Raingeval, Chiara Mungo, Philip D. Rubin, Raffaella Santoro

This paper introduces NoLMseq, a method to map nucleolar-associated domains (NADs) in single cells, revealing their heterogeneity and response to nucleolar stress.

Nature Communications · Dec 17, 2025Peer-reviewedGenomics

Capped nascent RNA sequencing reveals novel therapy-responsive enhancers in prostate cancer

Kellie A. Cotter, Sagar R. Shah, Mauricio I. Paramo, Shaoke Lou, Yao Li, Philip D. Rubin, You Chen, Mark Gerstein, Mark A. Rubin, Haiyuan Yu

This study uses PRO-cap to identify drug-responsive enhancers in prostate cancer, finding many not detected by ChIP-seq or ATAC-seq.

bioRxiv · Apr 8, 2022 · PreprintGenomics