Author

Qing Nie

University of California, Irvine

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 1 Molecular Biology· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 3 Approach:statistical model· 3 Research Focus:cell-cell communication· 2 Approach:experimental assay· 2 Research Focus:trajectory inference· 2 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Approach:deep learning· 1

Frequent Co-Authors

Suoqin JiniD· 2 shared Anand K. GanesaniD· 1 shared Bruce J. TrombergiD· 1 shared Christopher M. PolleysiD· 1 shared Craig Mizzoni· 1 shared Francisca Ruis-Diaz· 1 shared Griffin R. LentschiD· 1 shared Han Hou· 1 shared

Activity by Year

2020-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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2 shared papersMolecular Biology

Suoqin JinORCID

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Author profile →

3 papers

Recent·Most cited

Virtual dynamics of spatiotemporal single-cell interactions

Zhenyi Zhang, Zihan Wang, Qinxue Tian, Han Hou, Jiaqi Han, Jiantao Shen, Yuhao Sun, Xueya Zhou, Qiangwei Peng, Qing Nie, Tiejun Li, Peijie Zhou

CytoBridge reconstructs continuous virtual cell dynamics from sparse spatial transcriptomic data across development, regeneration, and neurodegeneration.

bioRxiv · Nov 6, 2026 · PreprintBioinformatics

Multimodal Analyses of Stable Vitiligo Skin Identify Tissue Interactions That Control Disease Persistence

Jessica Shiu, Lihua Zhang, Griffin R. Lentsch, Jessica L. Flesher, Suoqin Jin, Christopher M. Polleys, Seong Jin Jo, Craig Mizzoni, Pezhman Mobasher, Jasmine Kwan, Francisca Ruis-Diaz, Bruce J. Tromberg, Irene Georgakoudi, Qing Nie, Mihaela Balu, Anand K. Ganesan

The paper identifies keratinocyte subpopulations in stable vitiligo skin that drive disease persistence through CXCL signaling and altered metabolism.

bioRxiv · Dec 3, 2021 · PreprintMolecular Biology

Robust Population Single Neuronal Calcium Signal Extraction Using SCOUT Allows for Longitudinal Analysis of Behavior-associated Neural Ensemble Dynamics

Kevin G. Johnston, Steven F. Grieco, Zhaoxia Yu, Suoqin Jin, Tong Shen, Rachel Crary, John F. Guzowski, Todd C. Holmes, Qing Nie, Xiangmin Xu

SCOUT improves neuronal tracking in longitudinal calcium imaging by reducing motion artifacts and false discoveries, enabling analysis of neural ensemble dynamics over 60 days.

bioRxiv · Aug 26, 2020 · PreprintNeuroscience