Author

R. D. Acemel

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 3 Assay:whole-genome sequencing· 3 Approach:comparative / phylogenetic analysis· 2 Approach:experimental assay· 2 Research Focus:gene regulatory network inference· 2 Organism:multiple species· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

J. J. Tena· 4 shared J. L. Gomez-Skarmeta· 4 shared F. Marletaz· 2 shared H. Escriva· 2 shared I. Maeso· 2 shared M. Irimia· 2 shared S. Naranjo· 2 shared A. Andrescavage· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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4 shared papersEvolutionary Biology

J. J. Tena

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Author profile →

4 papers

Recent·Most cited

The little skate genome and the evolutionary emergence of wing-like fin appendages

F. Marletaz, E. de la Calle-Mustienes, R. D. Acemel, T. Nakamura, C. Paliou, S. Naranjo, P. M. Martinez-Garcia, I. Cases, V. A. Sleight, C. Hirschberger, M. Marcet-Houben, D. Navon, A. Andrescavage, K. Skvortsova, P. E. Duckett, , J. L. Gomez-Skarmeta

This study identifies genomic rearrangements and regulatory changes in the little skate that contribute to the evolution of wing-like fin appendages.

bioRxiv · Mar 21, 2022 · PreprintEvolutionary Biology

Parallel evolution of amphioxus and vertebrate small-scale gene duplications

M. Braso-Vives, F. Marletaz, A. Echchiki, F. Mantica, R. D. Acemel, J. L. Gomez-Skarmeta, D. A. Hartasanchez, L. L. Targa, P. Pontarotti, J. J. Tena, I. Maeso, H. Escriva, M. Irimia, M. Robinson-Rechavi

This study compares small-scale gene duplication patterns between amphioxus and vertebrates, finding similar duplication histories and functional constraints despite amphioxus' slower evolution.

bioRxiv · Jan 18, 2022Evolutionary Biology

Gain of gene regulatory network interconnectivity at the origin of vertebrates

A. Gil-Galvez, S. Jimenez-Gancedo, R. D. Acemel, S. Bertrand, M. Schubert, H. Escriva, J. J. Tena, J. L. Gomez-Skarmeta

The paper shows that increased interconnectivity between signaling pathways and gene regulatory networks contributed to vertebrate evolution by enabling new gene expression patterns and cell types.

bioRxiv · Apr 25, 2020Evolutionary Biology

Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications

M. Touceda-Suarez, E. M. Kita, R. D. Acemel, P. N. Firbas, M. S. Magri, S. Naranjo, J. J. Tena, J. L. Gomez-Skarmeta, I. Maeso, M. Irimia

The paper shows that ancient genomic regulatory blocks (GRBs) were maintained as single copies in humans after vertebrate whole genome duplications, with their duplicated copies dismantled to form gene deserts.

bioRxiv · Sep 25, 2019Evolutionary Biology