Author

R. D. Zwittink

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 3 Pharmacology & Toxicology· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metabolomics· 4 Assay:metagenomics· 4 Approach:statistical model· 4 Assay:bulk RNA-seq· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Research Focus:differential expression· 2 Approach:experimental assay· 2

Frequent Co-Authors

Q. R. Ducarmon· 5 shared E. J. Kuijper· 3 shared M. Antoniou· 3 shared R. Mesnage· 3 shared A. R. Geelen· 2 shared C. Amiel· 2 shared D. Mandrioli· 2 shared F. Belpoggi· 2 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

5 shared papersPharmacology & Toxicology

Q. R. Ducarmon

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Fungal-bacterial gut microbiota interactions in patients with Clostridioides difficile colonisation and infection

J. G. E. Henderickx, M. J. T. Crobach, E. M. Terveer, W. K. Smits, E. J. Kuijper, R. D. Zwittink

This study examines fungal-bacterial gut microbiota interactions in patients with C. difficile colonisation and infection, finding differences in fungal abundance and indirect interactions with bacteria.

bioRxiv · Jul 12, 2023 · PreprintMicrobiology

Impacts of dietary exposure to pesticides on faecal microbiome metabolism in adult twins

R. Mesnage, R. C. E. Bowyer, S. El Balkhi, F. Saint-Marcoux, A. Gardere, Q. R. Ducarmon, A. R. Geelen, R. D. Zwittink, D. Tsoukalas, E. Sarandi, E. I. Paramera, T. Spector, C. Steves, M. Antoniou

This study links pesticide exposure to changes in gut microbiome composition and function in adult twins using urinary biomarkers and metagenomic/metabolomic analyses.

bioRxiv · Jun 16, 2021Pharmacology & Toxicology

Asymptomatic gut colonization by extended-spectrum beta-lactamase-producing Escherichia coli is not associated with an altered gut microbiome or metabolome in Dutch adults

Q. R. Ducarmon, R. D. Zwittink, R. P. J. Willems, A. Verhoeven, S. Nooij, F. R. M. van der Klis, E. Franz, J. Kool, M. Giera, C. M. J. E. Vandenbroucke-Grauls, S. Fuentes, E. J. Kuijper

This study finds that asymptomatic gut colonization by ESBL-producing E. coli in Dutch adults is not linked to changes in microbiome or metabolome composition.

bioRxiv · May 18, 2021 · PreprintMicrobiology

Multi-omics phenotyping of the gut-liver axis allows health risk predictability from in vivo subchronic toxicity tests of a low-dose pesticide mixture

R. Mesnage, M. Teixeira, D. Mandrioli, L. Falcioni, Q. R. Ducarmon, R. D. Zwittink, C. Amiel, J.-M. Panoff, E. Bourne, E. Savage, C. A. Mein, F. Belpoggi, M. Antoniou

The paper uses multi-omics analysis on pesticide-exposed rats to show metabolic and epigenetic changes in the gut-liver axis that predict health risks not detected by standard tests.

bioRxiv · Aug 25, 2020 · PreprintPharmacology & Toxicology

Shotgun metagenomics and metabolomics reveal glyphosate alters the gut microbiome of Sprague-Dawley rats by inhibiting the shikimate pathway

R. Mesnage, M. Teixeira, D. Mandrioli, L. Falcioni, Q. R. Ducarmon, R. D. Zwittink, C. Amiel, J.-M. Panoff, F. Belpoggi, M. Antoniou

This study shows glyphosate inhibits the shikimate pathway in rat gut microbiota, altering microbial communities and metabolites, with potential health implications.

bioRxiv · Dec 11, 2019Pharmacology & Toxicology

Toward standards in clinical microbiome studies: comparison of three DNA extraction methods and two bioinformatic pipelines

Q. R. Ducarmon, B. B. V. H. Hornung, A. R. Geelen, E. J. Kuijper, R. D. Zwittink

This study compares three DNA extraction methods and two bioinformatic pipelines for microbiome analysis, finding that methods vary in accuracy and that negative controls are critical for low-biomass samples.

bioRxiv · Aug 30, 2019 · PreprintMicrobiology