Author

Rodrigo Ibarra Chavez

University of Copenhagen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Organism:bacteria (other)· 1 Research Focus:database / resource· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Adriano M. GiganteiD· 1 shared Alessio Ling Jie YangiD· 1 shared Alexander PerfilyeviD· 1 shared Anastasiya GædeiD· 1 shared Andrew D. MillardiD· 1 shared Anisha M. ThankiiD· 1 shared Anu TyagiiD· 1 shared Artyom A. EgoroviD· 1 shared

Activity by Year

2025-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMicrobiology

Adriano M. GiganteORCID

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Author profile →

2 papers

Recent·Most cited

Characterization of five environmental phages infecting Escherichia coli K-12 isolated during a phage biology training course

Lena Shyrokova, Artyom A. Egorov, Astrid Cole, Julián J. Duque-Pedraza, Anu Tyagi, Karin Ernits, Toomas Mets, Tatsuaki Kurata, J. Juozapaitis, Alessio Ling Jie Yang, Rodrigo Ibarra Chavez, Frederik Oskar Graversgaard Henriksen, Swenja Lassen, Gemma Catherine Atkinson, Vasili Hauryliuk, Marcus Johansson

The paper isolates and characterizes five Escherichia coli phages, identifies their defense system sensitivities, and highlights the educational value of phage isolation training.

Microbiology Spectrum · Nov 6, 2025Peer-reviewedMicrobiology

Hidden in plain sight: Bacterial genomes reveal thousands of lytic phages with therapeutic potential

Alexander Perfilyev, Anastasiya Gæde, Steve Hooton, Sara Ahmed Zahran, Caroline S Winther-Have, Panos G. Kalatzis, Rodrigo Ibarra Chavez, Rachael C. Wilkinson, Anisha M. Thanki, Bent Petersen, Zhengjie Liu, Qing Zhang, Qianghua Lv, Yuqing Liu, Adriano M. Gigante, , Thomas Sicheritz‐Pontén

The paper identifies thousands of lytic phage genomes within bacterial assemblies, expanding known phage diversity and suggesting clinical isolates may contain therapeutic phage candidates.

bioRxiv · May 6, 2025 · PreprintMicrobiology