Author

Rongrong Cui

Chinese Academy of Sciences

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Biology Disciplines

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Biochemistry· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:drug response / drug discovery· 2 Approach:transformer / foundation model· 2 Research Focus:benchmarking· 1 Assay:metabolomics· 1 Assay:protein sequence· 1 Research Focus:sequence-to-function modeling· 1

Frequent Co-Authors

Mingyue ZhengiD· 2 shared Chen Zheng· 1 shared Chenmao Zhou· 1 shared Chuanlong Zeng· 1 shared Hao GuoiD· 1 shared Hualiang JiangiD· 1 shared Jiacheng XiongiD· 1 shared Jie ChangiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBiochemistry

Mingyue ZhengORCID

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2 papers

Recent·Most cited

MetaReact: A Reaction-Aware Transformer for End-to-End Prediction of Drug Metabolism

Yitian Wang, Jingxin Rao, Wei Zhang, Yuqi Shi, Chuanlong Zeng, Rongrong Cui, Yinquan Wang, Jiacheng Xiong, Xutong Li, Mingyue Zheng

MetaReact predicts drug metabolites and enzyme selectivity using a reaction-aware Transformer, outperforming existing methods in accuracy and generalizability.

bioRxiv · Mar 18, 2026 · PreprintBiochemistry

Drug design and repurposing with a sequence-to-drug paradigm

Lifan Chen, Zisheng Fan, Jie Chang, Ruirui Yang, Hao Guo, Yinghui Zhang, Tianbiao Yang, Chenmao Zhou, Zhengyang Chen, Chen Zheng, Xinyue Hao, Keke Zhang, Rongrong Cui, Yiluan Ding, Naixia Zhang, , Mingyue Zheng

This paper introduces a sequence-to-drug paradigm using TransformerCPI2.0 to discover drug-like molecules from protein sequences and validates its effectiveness for three targets.

bioRxiv · Mar 26, 2022 · PreprintMolecular Biology