Author

Ruyi Shi

Fuzhou UniversityPrimary ORCID profile (0009-0000-9482-5078 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Same name, identified by ORCID

Ruyi ShiiD1 paper · University of Cambridge

Biology Disciplines

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Biochemistry· 1 Synthetic Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:benchmarking· 1 Organism:E. coli· 1 Research Focus:protein folding & dynamics· 1

Frequent Co-Authors

Aachen· 1 shared Aalto-Helsinki· 1 shared Abigail Sison· 1 shared AHUT_China· 1 shared Aix-Marseille· 1 shared Akinwumi Akinfenwa· 1 shared Anastasia ZervaiD· 1 shared Anna Tutuianu· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperSynthetic Biology

Aachen

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2 papers

Recent·Most cited

Mechanistic Insights into Cyclic Penta-Adenylate-Mediated Activation of Type III CRISPR Ribonuclease Csm6

Ruyi Shi, Mengquan Yang, Yusong Liu, Haishan Gao, Zhonghui Lin

This study identifies cA5 as the activator for ApCsm6, a type III CRISPR ribonuclease, and reveals its structural basis for cA5-selective recognition and self-limiting activity through Cryo-EM structures.

bioRxiv · Oct 25, 2025 · PreprintBiochemistry

Robust Estimation of Bacterial Cell Count from Optical Density

Jacob Beal, Natalie G. Farny, Traci L. Haddock, Vinoo Selvarajah, Geoff S. Baldwin, Russell Buckley-Taylor, Markus C. Gershater, Daisuke Kiga, John P. Marken, Vishal Sanchania, Abigail Sison, Christopher Thomas Workman, iGEM Interlab Study Contributors, Aachen, Meryem Pehlivan, , Dror Aizik

The paper evaluates three OD calibration protocols for bacterial cell count estimation and recommends serial dilution of silica microspheres for its precision and compatibility with flow cytometry.

Communications Biology · Sep 17, 2020Peer-reviewedSynthetic Biology