Author

S. D. Simpson

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioengineering· 3 Ecology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:cell type annotation· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Organism:C. elegans· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:deep learning· 1

Frequent Co-Authors

E. Marcellin· 3 shared K. Valgepea· 3 shared J. K. Heffernan· 2 shared L. K. Nielsen· 2 shared R. Tappel· 2 shared A. Haguenauer· 1 shared A. Harris· 1 shared A. Hoey· 1 shared

Activity by Year

2019-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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3 shared papersBioengineering

E. Marcellin

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Author profile →

5 papers

Recent·Most cited

Unlocking the soundscape of coral reefs with artificial intelligence: pretrained networks and unsupervised learning win out

B. Williams, S. M. Balvanera, S. S. Sethi, T. A. C. Lamont, J. Jompa, M. Prasetya, L. Richardson, E. Weschke, A. Hoey, R. Beldade, S. C. Mills, A. Haguenauer, F. Zuberer, S. D. Simpson, D. Curnick, K. E. Jones

This paper demonstrates that pretrained neural networks and unsupervised learning effectively analyze coral reef soundscapes for ecological insights without manual annotation.

bioRxiv · Feb 2, 2024Ecology

Autotrophic adaptive laboratory evolution of the acetogen Clostridium autoethanogenum delivers the gas-fermenting strain LAbrini with superior growth, products, and robustness

H. Ingelman, J. K. Heffernan, A. Harris, S. D. Brown, K. M. Shaikh, A. Yar Saqib, M. J. Pinheiro, L. A. de Lima, K. Rodriguez Martinez, R. A. Gonzalez-Garcia, G. Hawkins, J. Daleiden, L. Tran, H. Zeleznik, R. O. Jensen, , K. Valgepea

This study evolves C. autoethanogenum through adaptive laboratory evolution to create a strain with faster growth, better product profile, and improved robustness in continuous cultures.

bioRxiv · Jan 28, 2023Bioengineering

Temperature and O2, but not CO2, interact to affect aerobic performance of European sea bass (Dicentrarchus labrax)

D. W. Montgomery, S. D. Simpson, W. Davison, H. R. Goodrich, G. H. Engelhard, S. N. R. Birchenough, R. W. Wilson

This study examines how temperature, O2, and CO2 interact to affect aerobic performance in European sea bass, finding that temperature and O2 interact, while CO2 has minimal effects.

bioRxiv · Mar 12, 2021 · PreprintEcology

Enhancing CO2-valorization using Clostridium autoethanogenum for sustainable fuel and chemicals production

J. K. Heffernan, K. Valgepea, R. d. S. P. Lemgruber, I. Casini, M. Plan, R. Tappel, S. D. Simpson, M. Koepke, L. K. Nielsen, E. Marcellin

This paper quantifies carbon flow in Clostridium autoethanogenum fermenting CO2 and H2, showing CO supplementation improves ethanol yield and CO2 valorization.

bioRxiv · Jan 23, 2020Bioengineering

A TetR-family protein activates transcription from a new promoter motif associated with essential genes for autotrophic growth in acetogens

R. de Souza Pinto Lemgruber, K. Valgepea, R. A. Gonzalez Garcia, C. de Bakker, R. W. Palfreyman, R. Tappel, M. Kopke, S. D. Simpson, L. K. Nielsen, E. Marcellin

bioRxiv · Jun 13, 2019Bioengineering