Author

S. Salzberg

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 1 Microbiology· 1 Paleontology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:differential expression· 1 Organism:fungi (other)· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Research Focus:host-pathogen & immune response· 1

Frequent Co-Authors

A. Casadevall· 1 shared A. Gihawi· 1 shared A. Xu· 1 shared A. Zimin· 1 shared B. J. Novak· 1 shared B. Jia· 1 shared C. M. Brown· 1 shared C. S. Cooper· 1 shared

Activity by Year

2017-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperMicrobiology

A. Casadevall

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3 papers

Recent·Most cited

Major data analysis errors invalidate cancer microbiome findings

A. Gihawi, Y. Ge, J. Lu, D. Puiu, A. Xu, C. S. Cooper, D. S. Brewer, M. Pertea, S. Salzberg

The paper re-analyzes a cancer microbiome study and identifies two major data and methodological errors that invalidate its findings and those of subsequent studies.

bioRxiv · Jul 28, 2023Cancer Biology

Life Inside A Dinosaur Bone: A Thriving Microbiome

E. T. Saitta, R. Liang, C. Y. Lau, C. M. Brown, N. R. Longrich, T. G. Kaye, B. J. Novak, S. Salzberg, P. Donohoe, M. Dickinson, J. Vinther, I. D. Bull, R. A. Brooker, P. Martin, G. D. Abbott, , T. C. Onstott

This study shows that Late Cretaceous dinosaur bones host a living microbiome, distinct from surrounding sediment, challenging assumptions about fossil preservation and original organic material.

bioRxiv · Sep 7, 2018Paleontology

First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (formerly Scedosporium prolificans)

R. Luo, A. Zimin, R. Workman, Y. Fan, G. Pertea, N. Grossman, M. Wear, B. Jia, H. Miller, A. Casadevall, W. Timp, S. Zhang, S. Salzberg

The paper reports the first draft genome sequence of Lomentospora prolificans, assembled using Illumina and Oxford Nanopore reads, resulting in a highly contiguous genome with 8,656 protein-coding genes.

bioRxiv · Aug 3, 2017Microbiology