Author

S. Schattgen

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 3

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Organism:human· 3 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Assay:scRNA-seq· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Assay:CITE-seq· 1

Frequent Co-Authors

J. C. Crawford· 3 shared A. Souquette· 2 shared P. Bradley· 2 shared P. G. Thomas· 2 shared A. Ellebedy· 1 shared A. Fiore-Gartland· 1 shared A. Haile· 1 shared A. J. Schmitz· 1 shared

Activity by Year

2020-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersImmunology

J. C. Crawford

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Author profile →

3 papers

Recent·Most cited

Spatiotemporal development of the human T follicular helper cell response to Influenza vaccination

S. Schattgen, J. S. Turner, M. A. Ghonim, J. C. Crawford, A. J. Schmitz, H. Kim, J. Q. Zhou, W. Awad, W. Kim, K. M. McIntire, A. Haile, M. K. Klebert, T. Suessen, W. D. Middleton, S. A. Teefey, , P. Thomas

This study tracks the spatiotemporal dynamics of human T follicular helper (TFH) cells after influenza vaccination, showing clonal expansion, phenotypic changes, and lineage-specific responses over two years.

bioRxiv · Aug 29, 2023 · PreprintImmunology

TCR meta-clonotypes for biomarker discovery with tcrdist3: identification of public, HLA-restricted SARS-CoV-2 associated TCR features

K. Mayer-Blackwell, S. Schattgen, L. Cohen-Lavi, J. C. Crawford, A. Souquette, J. A. Gaevert, T. Hertz, P. G. Thomas, P. Bradley, A. Fiore-Gartland

The paper introduces meta-clonotypes for TCR analysis, identifies HLA-restricted SARS-CoV-2 TCR features, and develops tcrdist3 for repertoire analysis.

bioRxiv · Dec 24, 2020Immunology

Linking T cell receptor sequence to transcriptional profiles with clonotype neighbor graph analysis (CoNGA)

S. Schattgen, K. Guion, J. C. Crawford, A. Souquette, A. Martinez Barrio, M. J. T. Stubbington, P. G. Thomas, P. Bradley

The paper introduces CoNGA, a graph-theoretic method to analyze relationships between TCR sequences and gene expression in T cells, revealing known and novel associations across human and mouse datasets.

bioRxiv · Jun 4, 2020Immunology