Author

S. Sopper

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Cancer Biology· 2 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Research Focus:cell type annotation· 2 Assay:scRNA-seq· 2 Research Focus:differential expression· 1 Research Focus:drug response / drug discovery· 1 Research Focus:gene regulatory network inference· 1 Research Focus:metabolism & bioenergetics· 1

Frequent Co-Authors

Z. Trajanoski· 3 shared A. Krogsdam· 2 shared A. Martowicz· 2 shared A. Pircher· 2 shared D. Wolf· 2 shared G. Fotakis· 2 shared G. Untergasser· 2 shared S. Salcher· 2 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 33 mutual co-author links

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3 shared papersCancer Biology

Z. Trajanoski

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Comparative Analysis of Whole Transcriptome Single-Cell Sequencing Technologies in Complex Tissues

S. Salcher, I. Heidegger, G. Untergasser, G. Fotakis, A. Scheiber, A. Martowicz, A. Noureen, A. Krogsdam, C. Schatz, G. Schafer, Z. Trajanoski, D. Wolf, S. Sopper, A. Pircher

This study compares two scRNA-seq platforms, finding differences in cell population abundance and mRNA quantification, guiding platform selection and data interpretation.

bioRxiv · Jul 3, 2023Cancer Biology

13C tracer analysis reveals the landscape of metabolic checkpoints in human CD8+ T cell differentiation

A. Kirchmair, N. Nemati, G. Lamberti, M. P. Trefny, A. Krogsdam, A. Siller, P. Hörtnagl, P. Schumacher, S. Sopper, A. M. Sandbichler, A. Zippelius, B. Ghesquiere, Z. Trajanoski

This study uses 13C metabolomics and transcriptomics to analyze metabolic changes in CD8+ T cells during differentiation, identifying key metabolic checkpoints and their role in exhaustion.

bioRxiv · May 18, 2023 · PreprintImmunology

High-resolution single-cell atlas reveals diversity and plasticity of tissue-resident neutrophils in non-small cell lung cancer

S. Salcher, G. Sturm, L. Horvath, G. Untergasser, G. Fotakis, E. Panizzolo, A. Martowicz, G. Pall, G. Gamerith, M. Sykora, F. Augustin, K. Schmitz, F. Finotello, D. Rieder, S. Sopper, , Z. Trajanoski

The paper integrates single-cell data to create a high-resolution atlas of NSCLC tumor microenvironments, revealing immune cell diversity, neutrophil plasticity, and associations with treatment outcomes.

bioRxiv · May 9, 2022Cancer Biology