Author

Sabine Schmidt

German Cancer Research Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Genomics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Adam P. Butler· 1 shared Akihiro FujimotoiD· 1 shared Andrew Menzies· 1 shared Andrey KorshunoviD· 1 shared Anne-Sophie Sertier· 1 shared Barbara HutteriD· 1 shared Benedikt BrorsiD· 1 shared Bo KongiD· 1 shared

Activity by Year

2015-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Adam P. Butler

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2 papers

Recent·Most cited

Preoperative biliary stenting is associated with functional dysbiosis and impaired bile acid metabolism in pancreatic cancer - Impact of preoperative biliary stenting on gut microbiota

Marionna Cathomas, Eli Zamir, Marisa Isabell Keller, Toohina Gobin, Laila Jötten, Elias Gauer, Max Heckler, Bo Kong, Rogier Aäron Gaiser, Ingmar Florin Rompen, Jonathan M. Harnoss, Sabine Schmidt, Franco Fortunato, Martin Loos, Eran Elinav, , Thomas P. Hank

This study examines how preoperative biliary stenting affects gut microbiota and bile acid metabolism in pancreatic cancer patients, finding reduced diversity and impaired metabolism linked to postoperative complications.

bioRxiv · May 21, 2026 · PreprintMicrobiology

A comprehensive multicenter comparison of whole genome sequencing pipelines using a uniform tumor-normal sample pair

Ivo Buchhalter, Barbara Hutter, Tyler S. Alioto, Timothy A. Beck, Paul C. Boutros, Benedikt Brors, Adam P. Butler, Sasithorn Chotewutmontri, Robert E. Denroche, Sophia Derdak, Nicolle Diessl, Lars Feuerbach, Akihiro Fujimoto, Susanne Gröbner, Marta Gut, , on behalf of the ICGC Verification and Validation Working Group

This study compares whole genome sequencing pipelines across five centers using a uniform tumor-normal sample pair, identifying factors affecting output consistency.

bioRxiv · Jun 12, 2015 · PreprintGenomics