Author

Sami Smalling

Brigham and Women's Hospital

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Genomics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:metagenomics· 2 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Alexandre Pellan ChengiD· 2 shared Iwijn De VlaminckiD· 2 shared Joan Sesing Lenz· 2 shared Adrienne ChangiD· 1 shared Amy E SteadmaniD· 1 shared Christopher E. MasoniD· 1 shared Conor James Loy· 1 shared Darshana M. DadhaniaiD· 1 shared

Activity by Year

2020-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersGenomics

Alexandre Pellan ChengORCID

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2 papers

Recent·Most cited

A metagenomic DNA sequencing assay that is robust against environmental DNA contamination

Omary Mzava, Alexandre Pellan Cheng, Adrienne Chang, Sami Smalling, Liz-Audrey Djomnang Kounatse, Joan Sesing Lenz, Randy Longman, Amy E Steadman, Luis G. Gómez-Escobar, Edward James Schenck, Mirella Salvatore, Michael J. Satlin, Manikkam Suthanthiran, John R. Lee, Christopher E. Mason, , Iwijn De Vlaminck

The paper introduces Coffee-seq, a metagenomic DNA sequencing method that reduces environmental contamination, and applies it to detect infections and microbial signatures in clinical samples.

Nature Communications · Jul 21, 2022Peer-reviewedGenomics

Cell-free DNA Profiling Informs Major Complications of Hematopoietic Cell Transplantation

Alexandre Pellan Cheng, Matthew Pellan Cheng, Conor James Loy, Joan Sesing Lenz, Kaiwen Chen, Sami Smalling, Philip Burnham, Kaitlyn Marie Timblin, José Luis Orejas, Emily A. Silverman, Paz Polak, Francisco M. Marty, Jerome Ritz, Iwijn De Vlaminck

This study demonstrates that cell-free DNA analysis can detect multiple post-transplant complications in HCT recipients through methylation, metagenomic, and genomic profiling.

bioRxiv · Apr 25, 2020 · PreprintGenomics