Author

Samir Vaidya

GenentechPrimary ORCID profile (0009-0001-4675-7645 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Samir VaidyaiD1 paper · Genentech

Biology Disciplines

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Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 2 Assay:scRNA-seq· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:long-read sequencing· 1

Frequent Co-Authors

Ana Xavier‐MagalhãesiD· 2 shared Hari MenoniD· 2 shared Jessica M. Lund· 2 shared Minyi ShiiD· 2 shared Yuxin LiangiD· 2 shared Zora D. ModrusaniD· 2 shared Ahmet A. Kurdoglu· 1 shared Amelia Au‐Yeung· 1 shared

Activity by Year

2024-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 42 mutual co-author links

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2 shared papersGenomics

Ana Xavier‐MagalhãesORCID

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2 papers

Recent·Most cited

Single-cell long-read targeted sequencing reveals transcriptional variation in ovarian cancer

Ashley Byrne, Daniel Le, Kostianna Sereti, Hari Menon, Samir Vaidya, Neha Patel, Jessica M. Lund, Ana Xavier‐Magalhães, Minyi Shi, Yuxin Liang, Timothy Sterne-Weiler, Zora D. Modrusan, William Stephenson

This study introduces scTaILoR-seq, a long-read targeted RNA sequencing method, to enhance single-cell transcriptome analysis and identify isoform variation and SNV associations in ovarian cancer.

Nature Communications · Aug 12, 2024Peer-reviewedGenomics

Comparative Analysis of Commercial Single-Cell RNA Sequencing Technologies

Marco Claudio De Simone, Jonathan Hoover, Julia Lau, Hayley Bennet, Bing Wu, Cynthia Chen, Hari Menon, Amelia Au‐Yeung, Sean P. Lear, Samir Vaidya, Minyi Shi, Jessica M. Lund, Ana Xavier‐Magalhães, Yuxin Liang, Ahmet A. Kurdoglu, , Spyros Darmanis

This study compares ten commercial scRNA-seq technologies using PBMCs, finding the 10x Genomics kit offers superior performance and the Becton Dickinson kit provides cost-effective performance per cell.

bioRxiv · Jun 18, 2024 · PreprintMolecular Biology