Author

Sharon Samuel

Ben-Gurion University of the Negev

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Research Focus:drug response / drug discovery· 1 Organism:E. coli· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Albi CelajiD· 1 shared Alice Jiexin Gao· 1 shared Alston LoiD· 1 shared Amit G. DeshwariD· 1 shared Amrudha Mohan· 1 shared Arathi Shanavas· 1 shared Bhargav KanuparthiiD· 1 shared Brandon VaziD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Albi CelajORCID

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2 papers

Recent·Most cited

Metabolite correlation networks reveal complex phenotypes of adaptation-driving mutations

Sharon Samuel, Weronika Jasińska, Ezra Sternlicht, Matvey I. Nikelshparg, Daniel Kleiner, Shai Pilosof, Shimon Bershtein

The paper shows that adaptive mutations in E. coli alter metabolite correlation networks, improving fitness through network rewiring without directly affecting SAM metabolism.

Nature Communications · Sep 16, 2026Peer-reviewedEvolutionary Biology

An RNA foundation model enables discovery of disease mechanisms and candidate therapeutics

Albi Celaj, Alice Jiexin Gao, Tammy Lau, Erle M. Holgersen, Alston Lo, Varun Lodaya, Christopher B. Cole, Robert Edward Denroche, Carl Spickett, Omar Wagih, Pedro O. Pinheiro, Parth Vora, Pedrum Mohammadi‐Shemirani, Steve Chan, Zach Nussbaum, , Brendan J. Frey

The paper introduces BigRNA, an RNA foundation model that predicts RNA biology from DNA sequence and identifies therapeutic effects of SBOs on gene expression and splicing.

bioRxiv · Sep 20, 2023 · PreprintBioinformatics