Author

Shota Kudo

The University of Tokyo

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioengineering· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:protein structure· 1

Frequent Co-Authors

Akinobu SenooiD· 1 shared Amanda Mixon BlackwelliD· 1 shared Armiyaw Sebastian NasamuiD· 1 shared Brian A. KuhlmaniD· 1 shared Celine Slam· 1 shared Daniel E. GoldbergiD· 1 shared James Akira WohlschlegeliD· 1 shared José M. M. CaaveiroiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBiochemistry

Akinobu SenooORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

De novo masking domains that gate TNF-family ligand assembly and activity

Shota Kudo, Brian A. Kuhlman

This paper uses AI to design protein masks that control TNF-family ligand assembly and activity, enabling conditional activation and improved therapeutic applications.

bioRxiv · Apr 22, 2026 · PreprintBioengineering

Malaria parasites require a divergent heme oxygenase for apicoplast gene expression and biogenesis

Amanda Mixon Blackwell, Yasaman Jami‐Alahmadi, Armiyaw Sebastian Nasamu, Shota Kudo, Akinobu Senoo, Celine Slam, Kouhei Tsumoto, James Akira Wohlschlegel, José M. M. Caaveiro, Daniel E. Goldberg, Paul A. Sigala

This study identifies PfHO as essential for apicoplast biogenesis and gene expression in Plasmodium falciparum, revealing its role in maintaining apicoplast-encoded RNA levels.

eLife · Dec 11, 2024Peer-reviewedBiochemistry