Author

Shweta Gopaulakrishnan

Texas Advanced Computing Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Synthetic Biology· 3

Signature Assays, Organisms & Methods

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Organism:yeast· 3 Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1

Frequent Co-Authors

Anastasia DeckardiD· 3 shared Bree CumminsiD· 3 shared Bryan BartleyiD· 3 shared Daniel BryceiD· 3 shared George Zheng· 3 shared Jacob BealiD· 3 shared Joshua NowakiD· 3 shared Justin D. VranaiD· 3 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersSynthetic Biology

Anastasia DeckardORCID

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3 papers

Recent·Most cited

Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop

Bree Cummins, Justin D. Vrana, Robert C. Moseley, Hamed Eramian, Anastasia Deckard, Pedro Fontanarrosa, Daniel Bryce, Mark Weston, George Zheng, Joshua Nowak, Francis C. Motta, Mohammed Eslami, Kara Layne Johnson, Robert P. Goldman, Chris John Myers, , Steven B. Haase

This paper introduces DART, a DBTL loop for synthetic genetic circuit design, showing that complex circuits can be more robust and reproducible than simpler ones in budding yeast.

Synthetic Biology · Jan 1, 2023Peer-reviewedSynthetic Biology

Computational Prediction of Synthetic Circuit Function Across Growth Conditions

Bree Cummins, Robert C. Moseley, Anastasia Deckard, Mark Weston, George Zheng, Daniel Bryce, Joshua Nowak, Marcio Gameiro, Tomáš Gedeon, Konstantin Mischaikow, Jacob Beal, Tessa Johnson, Matthew W. Vaughn, Niall I. Gaffney, Shweta Gopaulakrishnan, , Steven B. Haase

The paper develops a computational method to predict synthetic circuit robustness across growth conditions and validates it with experimental results in budding yeast.

bioRxiv · Jun 13, 2022 · PreprintSynthetic Biology

Highly-Automated, High-Throughput Replication of Yeast-based Logic Circuit Design Assessments

Robert P. Goldman, Robert C. Moseley, Nicholas Roehner, Bree Cummins, Justin D. Vrana, Katie J. Clowers, Daniel Bryce, Jacob Beal, Matthew DeHaven, Joshua Nowak, Trissha Higa, Vanessa Biggers, Peter Lee, Jeremy P. Hunt, Lorraine Mosqueda, , Lorraine Mosqueda

The paper replicates yeast-based logic circuit design assessments using a high-throughput robotic framework, generating more flow cytometry data than the original study.

Synthetic Biology · Feb 1, 2022Peer-reviewedSynthetic Biology