Author

Siqian Li

University of California, San Francisco

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Organism:human· 2 Assay:spatial transcriptomics· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Chongyuan LuoiD· 2 shared JaeYeon Kim· 2 shared Matthew G. Heffel· 2 shared Mercedes F. ParedesiD· 2 shared Mohammad S. BaigiD· 2 shared Mohini Bhade· 2 shared Oier Pastor-AlonsoiD· 2 shared Andrew Chen· 1 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersNeuroscience

Chongyuan LuoORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Spatial and Molecular Progression of Neural Progenitor Cells in the Developing Human Dentate Gyrus

Oier Pastor-Alonso, Matthew G. Heffel, Mohammad S. Baig, Jasmine Harris, Susana González-Granero, Siqian Li, Sol Beccari, Julia S. F. Chu, Hannah Lambing, I-Ling Lu, Matthew Varughese, Andrew L. Cheng, Jessica Le, Mohini Bhade, JaeYeon Kim, , Mercedes F. Paredes

This study maps the spatial and molecular changes in neural progenitor cells in the human dentate gyrus from gestation to postnatal stages, showing a decline in neurogenic potential and transition to astrocytic features.

bioRxiv · Jun 8, 2026 · PreprintNeuroscience

A Single-Cell and Spatial 3D Multi-omic Atlas of Developing Human Basal Ganglia and Inhibitory Neurons

Matthew G. Heffel, Heng Xu, Oier Pastor-Alonso, Xinzhe Li, Mohammad S. Baig, Rayyan Irfan Ghoor, Runjia Li, Colin Kern, Joonho Kum, Yi Zhang, Jon Paino, Min Jen Tsai, Chu-Yi Tai, Grant Tucker, Zoey Zhao, , Chongyuan Luo

This study creates a 3D multi-omic atlas of developing human basal ganglia and inhibitory neurons, revealing lineage-specific 3D genomic dynamics and regulatory programs associated with neuropsychiatric disease risk.

bioRxiv · Jan 29, 2026 · PreprintGenomics

Reward history guides focal attention in whisker somatosensory cortex

Deepa L. Ramamurthy, Lucia Rodriguez, Celine Cen, Siqian Li, Andrew Chen, Daniel E. Feldman

The paper shows that mice shift attention between whiskers based on recent reward history, with specific neural correlates in the somatosensory cortex.

Nature Communications · Jul 1, 2025Peer-reviewedNeuroscience