Author

Stephen Kelly

NYU Langone Health

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Immunology· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Assay:Hi-C· 1 Organism:human· 1

Frequent Co-Authors

Aaron Wise· 1 shared Accelerating Medicines Partnership: RA/SLE Network· 1 shared Adam T. Chicoine· 1 shared Alexander Yu RudenskyiD· 1 shared Ami Ben-Artzi· 1 shared Amit LakhanpaliD· 1 shared Andrew Cordle· 1 shared Andrew D. FileriD· 1 shared

Activity by Year

2017-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperImmunology

Aaron Wise

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

SPP1hi macrophages in fibrin niches promote hyperplastic tissue remodeling in rheumatoid arthritis synovium

Ian Mantel, Haoxuan Zhang, Juan Vargas, Ce Gao, Hope A. Townsend, Richard D. Bell, Amit Lakhanpal, Miriam R. Fein, Accelerating Medicines Partnership: RA/SLE Network, Thomas M. Norman, Dana E. Orange, Daniel C. Ramirez, Edward F. DiCarlo, Susan M. Goodman, Melanie H. Smith, , Thomas Eisenhaure

SPP1hi macrophages in RA synovial fibrin deposits promote tissue hyperplasia.

Science Translational Medicine · Jun 24, 2026Peer-reviewedImmunology

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

Charalampos Lazaris, Stephen Kelly, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos

HiC-bench provides a comprehensive and reproducible platform for Hi-C data analysis, enabling parameter exploration and benchmarking of different tools and methods.

BMC Genomics · Jan 5, 2017Peer-reviewedBioinformatics