Author

T. Venkataraman

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Immunology· 2 Bioengineering· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Organism:human· 3 Assay:proteomics· 3 Research Focus:clustering· 2 Research Focus:differential expression· 2 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Approach:experimental assay· 1

Frequent Co-Authors

H. B. Larman· 3 shared A. Bhattacharyya· 1 shared A. Chen· 1 shared A. L. Mammen· 1 shared A.-M. Liebhoff· 1 shared B. Langmead· 1 shared B. M. Sie· 1 shared C. A. Sherman-Baust· 1 shared

Activity by Year

2021-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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3 shared papersImmunology

H. B. Larman

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn

A.-M. Liebhoff, T. Venkataraman, W. R. Morgenlander, M. Na, T. Kula, K. Waugh, C. Morrison, M. Rewers, R. Longman, J. Round, S. Elledge, I. Ruczinski, B. Langmead, H. B. Larman

The paper develops Dolphyn, a machine learning method to improve PhIP-Seq by prioritizing epitopes, increasing antibody-bound peptides from 10% to 31% and reducing synthesized peptides by 78%.

bioRxiv · Jul 30, 2023Bioengineering

Comprehensive profiling of antibody responses to the human anellome using programmable phage display

T. Venkataraman, H. Swaminathan, C. Arze, S. M. Jacobo, A. Bhattacharyya, T. David, D. Nawandar, S. Delagrave, V. Mani, N. L. Yozwiak, H. B. Larman

This study uses a phage display library to profile antibody responses to anelloviruses in human serum samples, finding most peptides are non-reactive and reactivity is limited to specific regions of the capsid protein.

bioRxiv · Mar 28, 2022Immunology

Prevalence, persistence, and genetics of antibody responses to protein toxins and virulence factors

J. W. Angkeow, D. R. Monaco, A. Chen, T. Venkataraman, S. Jayaraman, C. Valencia, B. M. Sie, T. Liechti, P. N. Farhadi, G. Funez-dePagnier, C. A. Sherman-Baust, M. Q. Wong, C. L. Sears, P. J. Simner, J. L. Round, , H. B. Larman

The paper uses PhIP-Seq with a ToxScan library to profile antibody responses to toxins and virulence factors in 1,000 individuals, finding MHC-II locus associations and novel anti-flagellin links to juvenile dermatomyositis.

bioRxiv · Oct 1, 2021 · PreprintImmunology