Author

Tomonori Nakamura

Kyoto University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

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Biology Disciplines

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Bioinformatics· 1 Cell Biology· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 2 Research Focus:batch correction / integration· 1 Research Focus:cell type annotation· 1 Organism:chicken / avian· 1 Research Focus:clustering· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Mitinori SaitouiD· 2 shared Akifumi Takaori‐KondoiD· 1 shared Chizuru Iwatani· 1 shared Hideaki Tsuchiya· 1 shared Ikuo Kawamoto· 1 shared Kazuhiro TakeuchiiD· 1 shared Ken MizutaiD· 1 shared Masahiro NaganoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersBioinformatics

Mitinori SaitouORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintSep 30, 2026

✦ In-depth digest

CycloCross: Adversarial single-cell RNA-seq data translation across species

Olympio Hacquard, Yuya Tokuta, Yusuke Imoto…·Yasuaki Hiraoka

Translating cells between mouse, macaque and human scRNA-seq with a CycleGAN, without ortholog mapping, preserved developmental time structure, imputed missing states and produced more realistic synthetic cells than scGAN.

1 citation

humanmouse

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Cell BiologyExperimental HematologyPeer-reviewedNov 1, 2025

Atlas of Cynomolgus Macaque Hematopoiesis

Shinichiro Oshima, Rahul Sinha, Kazuhiro Takeuchi…·Ryō Yamamoto

The paper develops a single-cell transcriptomic map of cynomolgus macaque hematopoietic stem cells and progenitors, revealing molecular differences from humans and a direct differentiation pathway to megakaryocyte lineages.

DOI 10.1016/j.exphem.2025.104974

chicken / avianscRNA-seq

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