Roberto Vera Alvarez

The paper introduces HXMS, a standardized file format for HX-MS data, and provides PFLink to convert existing data to this format, enhancing data processing and sharing.

This study uses structural mass spectrometry to reveal the sequential binding mechanism of progesterone receptor isoforms with co-regulatory proteins on target DNA.

ElasticBLAST performs BLAST sequence alignments in the cloud, handling multiple queries and reducing costs through cloud-native tools.

This paper introduces GTax, a tool to detect and remove foreign RNA contamination in sequencing samples, and shows it reduces chimeric transcripts in tomato de novo transcriptome assembly.

The paper introduces the BioContainers Registry and API to improve the findability, accessibility, interoperability, and reusability of bioinformatics tools and containers.

The paper identifies non-essential ribosomal proteins in bacteria and archaea by analyzing gene absences in the COG database and linking them to ribosome structure and genome evolution.

BAMscale processes DNA sequencing datasets to generate normalized peak scores and scaled coverage tracks for visualization.