Author

Wilbert van Workum

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Approach:graph neural network· 1 Organism:human· 1 Organism:plant (other)· 1

Frequent Co-Authors

Andrew StubbsiD· 1 shared Anne S. Bolijn· 1 shared B. VosmaniD· 1 shared Bart J. JansseniD· 1 shared Chris H. BangmaiD· 1 shared Christian R. RauschiD· 1 shared Daoud SieiD· 1 shared David van der Meer· 1 shared

Activity by Year

2021-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 36 mutual co-author links

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1 shared paperBioinformatics

Andrew StubbsORCID

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Author profile →

2 papers

Recent·Most cited

Insights from the first genome assembly of Onion (Allium cepa)

Richard Finkers, Martijn van Kaauwen, Kai Ament, Karin Burger-Meijer, Raymond Egging, Henk Huits, Linda P. Kodde, Laurens P. N. M. Kroon, Masayoshi Shigyo, Shusei Sato, B. Vosman, Wilbert van Workum, Olga E. Scholten

The paper presents the first high-quality genome assembly of onion, revealing a large genome with extensive transposon content and a high number of putative gene models.

G3 Genes Genomes Genetics · Jul 13, 2021Peer-reviewedGenomics

Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data

Youri Hoogstrate, Malgorzata A. Komor, René Böttcher, Job van Riet, Harmen J.G. van de Werken, Stef van Lieshout, Ralf Hoffmann, Evert van den Broek, Anne S. Bolijn, Natasja F. J. Dits, Daoud Sie, David van der Meer, Floor Pepers, Chris H. Bangma, Geert J.L.H. van Leenders, , Guido W Jenster

Dr. Disco identifies fusion transcripts and genomic breakpoints using non poly(A)-enriched RNA-seq data, revealing transcribed rearrangements and their expression effects in cancer samples.

bioRxiv · May 17, 2021 · PreprintBioinformatics