Author

Job van Riet

Erasmus MCORCID 0000-0001-7767-7923Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 3 Genetics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Research Focus:variant calling· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1

Frequent Co-Authors

Harmen J.G. van de WerkeniD· 3 shared Youri HoogstrateiD· 2 shared Andrew StubbsiD· 1 shared Anja SchneideriD· 1 shared Anne S. Bolijn· 1 shared Arthur P. ArnoldiD· 1 shared Bart J. JansseniD· 1 shared Chris H. BangmaiD· 1 shared

Activity by Year

2021-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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3 shared papersBioinformatics

Harmen J.G. van de WerkenORCID

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4 papers

Recent·Most cited

GeneticsNature CommunicationsPeer-reviewedOct 11, 2024

Four-Core Genotypes mice harbour a 3.2MB X-Y translocation that perturbs Tlr7 dosage

Jasper Panten, Stefania Prete, James Cleland…·Duncan T. Odom

The paper identifies an X-Y translocation in Four-Core Genotypes mice that increases Tlr7 expression and affects genetic interpretation.

39 citationstop 1%

mouseexperimental assay

𝕏 PostBluesky

BioinformaticsGigaSciencePeer-reviewedDec 28, 2022

Katdetectr: utilising unsupervised changepoint analysis for robust kataegis detection

Daan M. Hazelaar, Job van Riet, Youri Hoogstrate, Harmen J.G. van de Werken

Katdetectr detects kataegis loci in genomic data using unsupervised changepoint analysis, showing high accuracy and speed compared to existing tools.

8 citations

whole-genome sequencingstatistical model

𝕏 PostBluesky

BioinformaticsBioinformaticsPeer-reviewedNov 26, 2021

ProteoDisco: A flexible R approach to generate customized protein databases for extended search space of novel and variant proteins in proteogenomic studies

Wesley S. van de Geer, Job van Riet, Harmen J.G. van de Werken

ProteoDisco generates customized protein databases for proteogenomic studies by incorporating genomic variants and transcriptomic data into protein sequences.

3 citations

proteomicsstatistical model

𝕏 PostBluesky

BioinformaticsbioRxivPreprintMay 17, 2021

Detection of fusion transcripts and their genomic breakpoints from RNA sequencing data

Youri Hoogstrate, Malgorzata A. Komor, René Böttcher…·Guido W Jenster

Dr. Disco identifies fusion transcripts and genomic breakpoints using non poly(A)-enriched RNA-seq data, revealing transcribed rearrangements and their expression effects in cancer samples.

1 citation

humanbulk RNA-seq

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