Author

Xiangmin Xu

University of California, Irvine

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Biology Disciplines

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Neuroscience· 3 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:spatial transcriptomics· 3 Research Focus:cell type annotation· 2 Organism:mouse· 2 Research Focus:spatial domain detection· 2 Approach:statistical model· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Ai-Vy Le· 1 shared Alaina Petrella· 1 shared Aleksandra Bikkina· 1 shared Amit KleiniD· 1 shared Andrea Saldana Acerbo· 1 shared Anna BartlettiD· 1 shared Ariana S. BarcomaiD· 1 shared Ashwin A. BhandiwadiD· 1 shared

Activity by Year

2026-2026 · peak 4/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

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1 shared paperNeuroscience

Ai-Vy Le

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4 papers

Recent·Most cited

Single-probe, high-yield spatial mapping of diverse short RNA motifs

Guohao Liang, Kenneth N Joseph, Kayleigh Sim, Vadym Kuchumov, Zhiqun Tan, Xiangmin Xu, Fangyuan Ding

The paper introduces SMOOTHY-FISH, a method to visualize short RNA motifs at single-molecule resolution, revealing new spatial RNA biology insights in single cells and mouse brain tissues.

bioRxiv · Nov 4, 2026 · PreprintMolecular Biology

A Multimodal Single-Cell Epigenomic and 3D Genome Atlas of the Human Basal Ganglia

Wubin Ding, Amit Klein, Cindy Tatiana Báez-Becerra, Jonathan A. Rink, Anna Bartlett, Ruoxuan Wang, Qiurui Zeng, Rosa Castanon, Joseph R. Nery, Emma Osgood, William S. Owens, Alaina Petrella, Chumo Chen, Andrea Saldana Acerbo, Ariana S. Barcoma, , Joseph R. Ecker

This paper creates a multimodal single-cell atlas of the human basal ganglia, revealing epigenomic and 3D genome features across cell types and linking them to disease-associated genetic risk.

bioRxiv · Jun 23, 2026 · PreprintNeuroscience

Preparation and application of YFV-17D-derived Anterograde Trans-neuronal Viral Vectors for Neuroscience Research

Tanvi Panchumarthy, Lizbeth Munoz, Uzair Saleem, Ai-Vy Le, Ian Nelson, Ying Li, Xiangmin Xu, Wei Xu

The paper describes the preparation and application of anterograde trans-neuronal viral vectors derived from YFV-17D for mapping brain connectivity.

bioRxiv · Jan 9, 2026 · PreprintNeuroscience

A curvilinear coordinate flatmap for visualizing hippocampal structure and development

Ashwin A. Bhandiwad, Fae N. Kronman, Josephine K. Liwang, Pan Gao, Cyrille Rossant, Daniel Birman, Luis Puelles, Song‐Lin Ding, Xiangmin Xu, Lydia Ng, Yongsoo Kim, Tyler S. Mollenkopf

This paper introduces a curvilinear coordinate flatmap method to visualize hippocampal structure and development, revealing topographic variations obscured in standard coordinate systems.

Imaging Neuroscience · Jan 1, 2026Peer-reviewedNeuroscience