Author

Xiaofeng Wang

BGI Group (China)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Biochemistry· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Approach:graph neural network· 1 Assay:Hi-C· 1 Organism:plant (other)· 1

Frequent Co-Authors

Aryan Soltani Mohammadi· 1 shared Chang Shi· 1 shared Chao FangiD· 1 shared Derrick A Ousley· 1 shared Desnor N. ChigumbaiD· 1 shared Fangming YangiD· 1 shared Gabrielle May· 1 shared Hao Hou· 1 shared

Activity by Year

2018-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 10 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenomics

Aryan Soltani Mohammadi

Author profile →

4 papers

Recent·Most cited

Genos-m: a foundation model for human-associated microbial genomes

Chao Fang, Fangming Yang, Hao Hou, Huahui Ren, Huanzi Zhong, Huinan Xu, Jiahao Zhang, Jianxin Su, Jielun Cai, Jingnan Yuan, Leo Jingyu Lee, Junhua Li, Kui Wu, Lihui Wang, Liwen Xiong, , Zhun Shi

Genos-m is a foundation model for human-associated microbial genomes that outperforms existing models in gene-fitness prediction and community structure analysis.

bioRxiv · May 24, 2026 · PreprintBioinformatics

Biosynthesis of 14-membered cyclopeptide alkaloids via non-heme-iron- and 2-oxoglutarate-dependent oxidative decarboxylation

Jordan A. Hungerford, Lisa S. Mydy, Xiaofeng Wang, Lorena Mendoza-Perez, Derrick A Ousley, Khadija Shafiq, Kali M McDonough, Wenjie Li, Gabrielle May, Desnor N. Chigumba, Shengrui Yao, Roland D. Kersten

This study identifies the biosynthetic pathway for a 14-membered cyclopeptide alkaloid, lotusine A, involving non-heme-iron and 2-oxoglutarate-dependent oxidative decarboxylation and SAM-dependent N-terminal methylation.

Journal of the American Chemical Society · Feb 16, 2026Peer-reviewedBiochemistry

Improving Cell-type-specific 3D Genome Architectures Prediction Leveraging Graph Neural Networks

Ruoyun Wang, Weicheng Ma, Aryan Soltani Mohammadi, Saba Shahsavari, Soroush Vosoughi, Xiaofeng Wang

This paper introduces GRACHIP, a graph neural network model that improves prediction of cell-type-specific 3D genome architectures by incorporating genomic interaction information, showing better accuracy and generalizability than existing methods.

bioRxiv · May 21, 2024 · PreprintGenomics

SCDT: Detecting CNVs of low chimeric ratio in cf-DNA

Zhaoyang Qian, Xiaofeng Wang, Chang Shi, Rui Han, Yaoshen Wang, Hongmei Zhu

SCDT detects sub-chromosome CNVs in cf-DNA with high sensitivity and specificity using GC correction and segmentation algorithms.

bioRxiv · Sep 7, 2018 · PreprintBioinformatics