Hongmei Zhu

spaTrack infers spatial cell trajectories using optimal transport, revealing spatiotemporal dynamics in regeneration and tumor development.

Spateo provides a framework for spatiotemporal modeling of single-cell spatial transcriptomics data to study cell-cell interactions and organ development in 3D space.

stLFRsv detects structural variations using co-barcoded long reads, achieving 74.2% precision and 22.3% recall for deletions in HG002/NA24385.

AsmMix produces high-quality diploid genome assemblies by integrating co-barcoded and single-molecule sequencing data to reduce errors and improve contiguity.

SCDT detects sub-chromosome CNVs in cf-DNA with high sensitivity and specificity using GC correction and segmentation algorithms.