Author

Y. J. Bomble

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Biophysics· 1 Microbiology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Organism:Arabidopsis· 2 Organism:C. elegans· 2 Research Focus:cell type annotation· 2 Research Focus:protein folding & dynamics· 2 Assay:cryo-EM· 1 Assay:fluorescence / live-cell microscopy· 1 Assay:proteomics· 1

Frequent Co-Authors

B. Knott· 1 shared B. Urbanowicz· 1 shared D. G. Olson· 1 shared D. Jayachandran· 1 shared E. E. Romero· 1 shared E. Lam· 1 shared H.-T. Wang· 1 shared J. M. Yarborough· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperBiophysics

B. Knott

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Author profile →

4 papers

Recent·Most cited

Structural characterization and dynamics of AdhE ultrastructures from Clostridium thermocellum: A containment strategy for toxic intermediates.

S. J. Ziegler, B. Knott, J. N. Gruber, N. N. Hengge, Q. Xu, D. G. Olson, E. E. Romero, L.-M. Joubert, Y. J. Bomble

This study uses cryo-EM and molecular dynamics to characterize AdhE ultrastructures in C. thermocellum, revealing a containment strategy for toxic intermediates in ethanol synthesis.

bioRxiv · Feb 16, 2024Biophysics

Engineering and characterization of carbohydrate-binding modules to enable real-time imaging of cellulose fibrils biosynthesis in plant protoplasts

D. Jayachandran, P. Smith, M. Irfan, J. Sun, J. M. Yarborough, Y. J. Bomble, E. Lam, S. P. S. Chundawat

This study engineers and characterizes tandem carbohydrate-binding modules (CBMs) to enable real-time imaging of cellulose fibril biosynthesis in Arabidopsis protoplasts.

bioRxiv · Jan 2, 2023 · PreprintPlant Biology

Structure of the Xylan O-Acetyltransferase AtXOAT1 Reveals Molecular Insight into Polysaccharide Acetylation in Plants

B. Urbanowicz, V. Lunin, H.-T. Wang, V. Bharadwaj, P. M. Alahuhta, M. J. Pena, J.-Y. Yang, S. A. Archer-Hartmann, P. Azadi, M. Himmel, K. W. Moremen, W. S. York, Y. J. Bomble

The paper characterizes AtXOAT1, a plant xylan O-acetyltransferase, revealing its structural and mechanistic details for xylan acetylation.

bioRxiv · Jan 16, 2020 · PreprintBiochemistry

Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tapirins) from Extremely Thermophilic Caldicellulosiruptor Species

L. L. Lee, W. S. Hart, V. V. Lunin, M. Alahuhta, Y. J. Bomble, M. E. Himmel, S. E. Blumer-Schuette, M. W. W. Adams, R. M. Kelly

This study characterizes t[a]pirins, novel cellulose-binding proteins from Caldicellulosiruptor species, showing their binding affinity and structural diversity across different strains.

bioRxiv · Jun 30, 2018Microbiology