Author

Yujie Zhang

Gladstone Institutes

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioengineering· 2 Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1 Organism:mouse· 1 Organism:plant (other)· 1

Frequent Co-Authors

Akira KunitomiiD· 1 shared Alexis J. CombesiD· 1 shared Andrew C. YangiD· 1 shared Bin Yang· 1 shared Bing‐Ze LiniD· 1 shared Binita ShresthaiD· 1 shared Brinkley Artman· 1 shared Bumjoon Kim· 1 shared

Activity by Year

2025-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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1 shared paperBioinformatics

Akira KunitomiORCID

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Author profile →

4 papers

Recent·Most cited

Stabilizing gas in aqueous liquids with metal-organic frameworks for persistent acoustic transduction

Wang Wenliang, Weilong He, Miranda V. Walter, Zixiang Tong, Xiangping Liu, Binita Shrestha, Brinkley Artman, Ju-Chun Hsieh, Jinmo Jeong, Ilya Pyatnitskiy, Sihan Yu, Mengmeng Yao, Haiyue Xu, Jacob Baker, Lehu Bu, , Huiliang Wang

This paper demonstrates the stabilization of gas in aqueous environments using metal-organic frameworks to enable persistent acoustic transduction for long-term ultrasound-biological interfacing.

bioRxiv · Oct 29, 2026 · PreprintBioengineering

Tripeptidyl peptidase II is essential for maintaining cerebrovascular homeostasis of female mice and represents a novel therapeutic target for vascular dementia

Jin Zhao, Qing Guo, Xiaohong Xin, Yujie Zhang, Kaixuan Pei, Junyao Li, Gang Wang, Jinghui Li, Wanqi Sun, Sai Huang, Xueyu Fan, Linlin Luo, Wen Li, Yuqi Wang, Yuanyuan Cao, , Jisen Huai

This study identifies TPP2 as essential for cerebrovascular homeostasis in female mice, linking its deficiency to vascular degeneration and cognitive impairment, and suggests Far1 as a therapeutic target.

bioRxiv · May 8, 2026 · PreprintNeuroscience

Temporal AI model predicts drivers of cell state trajectories across human aging

Javier Gómez Ortega, Rangarajan D. Nadadur, Akira Kunitomi, Steven Kothen-Hill, Julian U G Wagner, Sarp Kurtoglu, Bumjoon Kim, Madigan M. Reid, Thomas Lu, Kaho Washizu, Lukas Zanders, Han Chen, Yujie Zhang, Sarah Ancheta, Sara Lichtarge, , Christina V. Theodoris

The paper introduces a temporal AI model, MaxToki, trained on extensive gene data to predict cell state changes across human aging and identifies age-modulating targets.

bioRxiv · Apr 1, 2026 · PreprintBioinformatics

Simple, fast, low-cost method to produce transgenic pollen

H.‐Y. Wang, Yujie Zhang, Wen Qu, Xin Zhang, Haiyong Qu

This paper develops a low-cost method to deliver genes into plant pollen using needle-free jet injection and vacuum infiltration, demonstrating its effectiveness in multiple plant species without tissue culture.

bioRxiv · May 26, 2025 · PreprintBioengineering