Author

Yurie Maeda

Rockefeller University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Neuroscience· 3 Developmental Biology· 2

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Organism:human· 3 Organism:mouse· 3 Research Focus:differential expression· 2 Assay:DNA methylation· 2 Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Nathaniel HeintziD· 3 shared Christina PressliD· 2 shared Maria Esterlita Siantoputri· 2 shared Tatsuya C. MurakamiiD· 2 shared Yukiko GotohiD· 2 shared Yusuke KishiiD· 2 shared Cuidong WangiD· 1 shared Daijiro KonnoiD· 1 shared

Activity by Year

2020-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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3 shared papersNeuroscience

Nathaniel HeintzORCID

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5 papers

Recent·Most cited

Artificial Intelligence-driven Whole-brain Cell Mapping with Highly Multiplexed In Situ Hybridization

Tatsuya C. Murakami, Meng Xia, Yurie Maeda, Yuejia Yin, Paolo Emilio Barbano, Ziyi Lin, Tomoyuki Mano, Kazuki Tainaka, Sam Reiter, Nathaniel Heintz

The paper introduces mFISH3D, a multiplexed staining technique combined with AI for high-resolution whole-brain cell mapping in mice and humans.

Neuron · Feb 18, 2026Peer-reviewedNeuroscience

In vivo transition in chromatin accessibility during differentiation of deep-layer excitatory neurons in the neocortex

Seishin Sakai, Yurie Maeda, Mai Saeki, Daijiro Konno, Keita Kawaji, Fumio Matsuzaki, Yutaka Suzuki, Yukiko Gotoh, Yusuke Kishi

The paper tracks chromatin accessibility changes in mouse embryonic deep-layer excitatory neurons during differentiation using RNA-seq and DNase-seq.

Development · Jun 12, 2025Peer-reviewedDevelopmental Biology

Epigenetic mechanisms governing cell type specific somatic expansion and toxicity in Huntington's disease

Matthew Baffuto, Kert Mätlik, Isaac Ilyashov, Hasnahana Chetia, Maria Esterlita Siantoputri, Erika Sipos, Yurie Maeda, Paul Darnell, Nicholas Didkovsky, Laura Kus, Thomas S. Carroll, Douglas Barrows, Christina Pressl, Nathaniel Heintz

This study identifies epigenetic mechanisms linking cell type-specific enhancer activity to somatic CAG expansion and toxicity in Huntington's disease.

bioRxiv · May 21, 2025 · PreprintNeuroscience

Open-source Photobleacher for Fluorescent Imaging of Large Pigment-Rich Tissues

Tatsuya C. Murakami, Nick Belenko, Griffin Dennis, Cuidong Wang, Maria Esterlita Siantoputri, Yurie Maeda, Christina Pressl, Nathaniel Heintz

The paper introduces an open-source photobleacher to quench endogenous pigments in tissues, enabling high-contrast fluorescent imaging for multiplexed molecular analysis.

bioRxiv · Feb 24, 2025 · PreprintNeuroscience

A simple method for gene expression in endo- and ectodermal cells in mouse embryos before neural tube closure

Yusuke Kishi, Yurie Maeda, Naohiro Kuwayama, Yukiko Gotoh

This study introduces a simple in utero injection method to introduce gene expression vectors into endo- and ectodermal cells of mouse embryos before neural tube closure, enabling tissue-specific labeling and analysis of gene function.

bioRxiv · May 14, 2020 · PreprintDevelopmental Biology