Author

Yuxin Li

Huazhong Agricultural University

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

Click to filter author papers

Biochemistry· 1 Bioinformatics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:statistical model· 3 Research Focus:database / resource· 2 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Akira IwaseiD· 1 shared Anne-Claire KrogeriD· 1 shared Aurélien J. F. DugourdiD· 1 shared Blerta Shtylla· 1 shared Caihong Meng· 1 shared Chen Shen· 1 shared Chunli CheniD· 1 shared Dénes TüreiiD· 1 shared

Activity by Year

2016-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperPlant Biology

Akira IwaseORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

PlantRegMoD: An integrative and AI-driven multi-omics database for plant regeneration research

Yue-Min Li, You-Bin Ma, Le-Yue Gui, Yi Tang, Caihong Meng, Yuxin Li, Li Yao, Jixiang Zhang, Siwei Xia, Youhao Peng, Shipeng Song, Zhebin Zeng, Jia-Bao He, Na Zhang, Pei-Xuan Xiao, , Wen‐Biao Jiao

PlantRegMoD is a multi-omics database for plant regeneration that integrates 20.54 TB of data from 147 projects across 32 species, offering tools for analysis and gene curation.

bioRxiv · Sep 17, 2026 · PreprintPlant Biology

Modeling causal signal propagation in multi-omic factor space with COSMOS

Aurélien J. F. Dugourd, Pascal Lafrenz, Diego Mañanes, Víctor Patón, Robin Fallegger, Anne-Claire Kroger, Dénes Türei, Yunfan Bai, Yuxin Li, Michael Trogdon, Drew Nager, Shibing Deng, Chen Shen, John D. Lapek, Blerta Shtylla, Julio Sáez-Rodríguez

The paper introduces COSMOS+ to integrate mechanistic prior knowledge with multi-omics data analysis to generate mechanistic hypotheses about disease resistance mechanisms.

bioRxiv · Jul 15, 2024 · PreprintBioinformatics

Metabolome Identification by Systematic Stable Isotope Labeling Experiments and False Discovery Analysis with a Target-Decoy Strategy

Drew R. Jones, Xusheng Wang, Tim Shaw, Ji-Hoon Cho, Ping-Chung Chen, Kaushik Kumar Dey, Suiping Zhou, Yuxin Li, Nam Chul Kim, J. Paul Taylor, Udhghatri Kolli, Jiaxu Li, Junmin Peng

The paper introduces JUMPm, a formula-based algorithm for metabolite identification and false discovery rate estimation in metabolomics, validated on yeast and mammalian cells.

bioRxiv · Nov 26, 2016 · PreprintBiochemistry