Author

Yuxin Shi

University of PittsburghPrimary ORCID profile (0000-0001-8466-5920 · 1 paper)Unclaimed ORCID profile · follow to get notified of new preprints

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Yuxin ShiiD1 paper · Cornell University

Biology Disciplines

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Cancer Biology· 1 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:fine-mapping· 1 Research Focus:GWAS / association mapping· 1 Organism:human· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Assay:whole-exome sequencing· 1

Frequent Co-Authors

Adrian V. LeeiD· 1 shared Alexander Chih-Chieh ChangiD· 1 shared Ashley Moo-ChoyiD· 1 shared Brent Thomas SchlegeliD· 1 shared Cristina L. AbbatangeloiD· 1 shared Daniel D. BrowniD· 1 shared Danyang LiiD· 1 shared Esteban Juan ParraiD· 1 shared

Activity by Year

2023-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperCancer Biology

Adrian V. LeeORCID

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2 papers

Recent·Most cited

Benchmarking scRNA-seq Copy Number Inference: A Comprehensive Evaluation and Practitioner Guide

Hung-Ching Chang, Yuxin Shi, Haoyu Cheng, Jian Zou, Alexander Chih-Chieh Chang, Brent Thomas Schlegel, Wenjia Wang, Daniel D. Brown, Fangyuan Chen, Sarah Wang, Danyang Li, Ria Sai, Noelle Michel, Steffi Oesterreich, Adrian V. Lee, George C. Tseng

This study benchmarks 12 scRNA-seq CNV inference methods across 28 datasets, finding allele-aware tools perform better with high-quality allelic data, while expression-centric tools are reliable with raw data.

bioRxiv · Apr 15, 2026 · PreprintCancer Biology

Exome-wide tandem repeats confer large effects on subcortical volumes in UK Biobank participants

Mary Anne Panoyan, Yuxin Shi, Cristina L. Abbatangelo, Nina Adler, Ashley Moo-Choy, Esteban Juan Parra, Renato A Polimanti, Pingzhao Hu, Frank R. Wendt

The paper identifies exome-wide tandem repeats associated with subcortical volumes and psychiatric symptoms in UK Biobank participants.

medRxiv · Dec 11, 2023 · PreprintGenetic & Genomic Medicine