Author

Lindsay L. Traeger

University of Wisconsin–MadisonORCID 0000-0001-5000-1990Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 2 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:mouse· 3 Approach:statistical model· 3 Assay:metagenomics· 2 Assay:bulk RNA-seq· 1 Research Focus:deconvolution· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Federico E. ReyiD· 3 shared Alan AttieiD· 2 shared Daniel M. GattiiD· 2 shared Donald S. StapletoniD· 2 shared Karl W. BromaniD· 2 shared Mark P. KelleriD· 2 shared Vanessa LinkeiD· 2 shared AD Attie· 1 shared

Activity by Year

2019-2021 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 34 mutual co-author links

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3 shared papersGenetics

Federico E. ReyORCID

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3 papers

Recent·Most cited

Systems genetics uncovers microbe-lipid-host connections in the murine gut

Qingjiong Zhang, Vanessa Linke, Katherine A. Overmyer, Lindsay L. Traeger, Kazuyuki Kasahara, IJ Miller, DE Manson, Thomas J. Polaske, Robert L. Kerby, J. H. Kemis, Elsie Trujillo, TR Reddy, JD Russell, Kathy L. Schueler, Donald S. Stapleton, , Federico E. Rey

This study identifies genetic links between gut microbiota, lipids, and host transcripts in mice, revealing key roles for Akkermansia muciniphila and ornithine lipids in microbe-host interactions.

bioRxiv · Nov 29, 2021 · PreprintGenetics

Identification of sample mix-ups and mixtures in microbiome data in Diversity Outbred mice

Alexandra K. Lobo, Lindsay L. Traeger, Mark P. Keller, Alan Attie, Federico E. Rey, Karl W. Broman

The paper identifies sample mix-ups and mixtures in microbiome data from Diversity Outbred mice using shotgun sequencing reads.

G3 Genes Genomes Genetics · Sep 2, 2021Peer-reviewedGenetics

Genetic determinants of gut microbiota composition and bile acid profiles in mice

Julia H. Kemis, Vanessa Linke, Kelsey L. Barrett, Frederick J. Boehm, Lindsay L. Traeger, Mark P. Keller, Mary E. Rabaglia, Kathryn L. Schueler, Donald S. Stapleton, Daniel M. Gatti, Gary A. Churchill, Daniel Amador‐Noguez, Jason D. Russell, Brian S. Yandell, Karl W. Broman, , Federico E. Rey

This study identifies genetic loci associated with gut microbiota composition and bile acid profiles in mice using QTL analysis and validation experiments.

PLoS Genetics · Aug 29, 2019Peer-reviewedSystems Biology