Author

Jiří Pešek

Institut national de recherche en sciences et technologies du numériqueORCID 0000-0001-5168-1326Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:host-pathogen & immune response· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Adam ŠmelkoiD· 1 shared Alejandro Madrid-ValienteiD· 1 shared Alexander George FletcheriD· 1 shared Alfonso ValenciaiD· 1 shared Arnau MontagudiD· 1 shared Bart SmeetsiD· 1 shared Bram LoriesiD· 1 shared Dirk DrasdoiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperSystems Biology

Adam ŠmelkoORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

MicrobiologybioRxivPreprintSep 26, 2026

Matrix-controlled emergence of biofilm architecture shapes antimicrobial survival

Tom E. R. Belpaire, Jolien Meesters, Thibault Debord…·Bart Smeets

This study shows that increasing matrix production in Salmonella biofilms reorganizes their structure, altering antimicrobial killing patterns and reducing antimicrobial survival.

DOI 10.64898/2026.09.25.752283

bacteria (other)experimental assay

𝕏 PostBluesky

Systems BiologybioRxivPreprintJul 16, 2025

Open Benchmarking for Cell-Based Multiscale Models: Lessons from a Community Initiative

Thaleia Ntiniakou, James M. Osborne, Jieling Zhao…·Arnau Montagud

This paper presents a community-driven benchmarking initiative for cell-based multiscale models, highlighting variations in tool implementations and advocating for standardized benchmarks and interoperability.

DOI 10.1101/2025.07.16.664358

benchmark studybenchmarking

𝕏 PostBluesky